Hb_000816_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig816: 41729-45193
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59398: 26448-41950 , PASA_asmbl_59399: 26448-41950 , PASA_asmbl_59400: 42704-43128 , PASA_asmbl_59402: 45047-45189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_050 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_064047_010 0.0990018475 - - conserved hypothetical protein [Ricinus communis]
3 Hb_050898_010 0.0994875498 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_002477_080 0.1065348474 - - hypothetical protein RCOM_0653450 [Ricinus communis]
5 Hb_002431_090 0.1078741849 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000325_010 0.117630791 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_002272_070 0.1196537007 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
8 Hb_000732_100 0.1229303092 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
9 Hb_003835_030 0.123714498 - - glycosyltransferase, partial [Arabidopsis thaliana]
10 Hb_103541_010 0.1238957897 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
11 Hb_000007_210 0.1244004417 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
12 Hb_001269_530 0.125849057 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_000922_290 0.1263614103 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
14 Hb_000976_340 0.1267457402 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_008092_020 0.1295924316 - - transcription factor, putative [Ricinus communis]
16 Hb_000537_090 0.1296187921 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005892_010 0.1301310504 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
18 Hb_000090_020 0.1311246591 - - acyltransferase, putative [Ricinus communis]
19 Hb_005784_020 0.132947837 - - Protein MKS1, putative [Ricinus communis]
20 Hb_001318_230 0.1331336065 - - Boron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_050 Hb_000816_050 Hb_064047_010 Hb_064047_010 Hb_000816_050--Hb_064047_010 Hb_050898_010 Hb_050898_010 Hb_000816_050--Hb_050898_010 Hb_002477_080 Hb_002477_080 Hb_000816_050--Hb_002477_080 Hb_002431_090 Hb_002431_090 Hb_000816_050--Hb_002431_090 Hb_000325_010 Hb_000325_010 Hb_000816_050--Hb_000325_010 Hb_002272_070 Hb_002272_070 Hb_000816_050--Hb_002272_070 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_064047_010--Hb_002431_090 Hb_002324_040 Hb_002324_040 Hb_064047_010--Hb_002324_040 Hb_010381_110 Hb_010381_110 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_005892_010 Hb_005892_010 Hb_050898_010--Hb_005892_010 Hb_000922_290 Hb_000922_290 Hb_050898_010--Hb_000922_290 Hb_183209_020 Hb_183209_020 Hb_050898_010--Hb_183209_020 Hb_000137_030 Hb_000137_030 Hb_050898_010--Hb_000137_030 Hb_103541_010 Hb_103541_010 Hb_050898_010--Hb_103541_010 Hb_000899_060 Hb_000899_060 Hb_002477_080--Hb_000899_060 Hb_001823_070 Hb_001823_070 Hb_002477_080--Hb_001823_070 Hb_002477_080--Hb_002431_090 Hb_002477_080--Hb_103541_010 Hb_000028_460 Hb_000028_460 Hb_002477_080--Hb_000028_460 Hb_189034_010 Hb_189034_010 Hb_002431_090--Hb_189034_010 Hb_003835_030 Hb_003835_030 Hb_002431_090--Hb_003835_030 Hb_000477_010 Hb_000477_010 Hb_002431_090--Hb_000477_010 Hb_008092_020 Hb_008092_020 Hb_002431_090--Hb_008092_020 Hb_000325_010--Hb_002477_080 Hb_014361_040 Hb_014361_040 Hb_000325_010--Hb_014361_040 Hb_000325_010--Hb_008092_020 Hb_135720_010 Hb_135720_010 Hb_000325_010--Hb_135720_010 Hb_001728_130 Hb_001728_130 Hb_000325_010--Hb_001728_130 Hb_002329_030 Hb_002329_030 Hb_002272_070--Hb_002329_030 Hb_000072_160 Hb_000072_160 Hb_002272_070--Hb_000072_160 Hb_011470_010 Hb_011470_010 Hb_002272_070--Hb_011470_010 Hb_126466_010 Hb_126466_010 Hb_002272_070--Hb_126466_010 Hb_006615_190 Hb_006615_190 Hb_002272_070--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_002272_070--Hb_145139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0669274 4.53448 0.655061 4.32565 0.0418414 0.0345749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.012451 0 0.0187854 1.53 1.48794

CAGE analysis