Hb_011470_010

Information

Type -
Description -
Location Contig11470: 21-794
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID KDO64062.1
description hypothetical protein CISIN_1g022501mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FKT2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022501mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011470_010 0.0 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
2 Hb_002272_070 0.0723638877 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
3 Hb_085010_010 0.0848065659 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
4 Hb_000072_160 0.1040716743 - - proline oxidase [Manihot esculenta]
5 Hb_126466_010 0.1104215684 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_002329_030 0.1185702818 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
7 Hb_014361_130 0.1305347779 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
8 Hb_145139_010 0.1325992547 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
9 Hb_006615_190 0.1375465598 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
10 Hb_027474_010 0.1449619617 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
11 Hb_000007_210 0.1520166525 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
12 Hb_000816_050 0.1526967974 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_008111_010 0.1554839222 - - hypothetical protein VITISV_021527 [Vitis vinifera]
14 Hb_000899_060 0.1564923755 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
15 Hb_005054_280 0.1576025524 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
16 Hb_123078_010 0.1590112385 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_009786_010 0.1594041491 - - Phosphoprotein phosphatase [Theobroma cacao]
18 Hb_002239_020 0.1601182917 - - MLO, putative [Theobroma cacao]
19 Hb_002097_210 0.1611980617 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002477_080 0.161553954 - - hypothetical protein RCOM_0653450 [Ricinus communis]

Gene co-expression network

sample Hb_011470_010 Hb_011470_010 Hb_002272_070 Hb_002272_070 Hb_011470_010--Hb_002272_070 Hb_085010_010 Hb_085010_010 Hb_011470_010--Hb_085010_010 Hb_000072_160 Hb_000072_160 Hb_011470_010--Hb_000072_160 Hb_126466_010 Hb_126466_010 Hb_011470_010--Hb_126466_010 Hb_002329_030 Hb_002329_030 Hb_011470_010--Hb_002329_030 Hb_014361_130 Hb_014361_130 Hb_011470_010--Hb_014361_130 Hb_002272_070--Hb_002329_030 Hb_002272_070--Hb_000072_160 Hb_002272_070--Hb_126466_010 Hb_006615_190 Hb_006615_190 Hb_002272_070--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_002272_070--Hb_145139_010 Hb_008111_010 Hb_008111_010 Hb_085010_010--Hb_008111_010 Hb_085010_010--Hb_126466_010 Hb_085010_010--Hb_002272_070 Hb_001971_020 Hb_001971_020 Hb_085010_010--Hb_001971_020 Hb_005306_020 Hb_005306_020 Hb_085010_010--Hb_005306_020 Hb_000072_160--Hb_002329_030 Hb_000072_160--Hb_006615_190 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_000072_160--Hb_014361_130 Hb_001823_070 Hb_001823_070 Hb_126466_010--Hb_001823_070 Hb_003439_020 Hb_003439_020 Hb_126466_010--Hb_003439_020 Hb_000028_460 Hb_000028_460 Hb_126466_010--Hb_000028_460 Hb_002477_080 Hb_002477_080 Hb_126466_010--Hb_002477_080 Hb_000007_210 Hb_000007_210 Hb_002329_030--Hb_000007_210 Hb_002329_030--Hb_014361_130 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010 Hb_014361_130--Hb_002272_070 Hb_014361_130--Hb_145139_010 Hb_009247_030 Hb_009247_030 Hb_014361_130--Hb_009247_030 Hb_066320_010 Hb_066320_010 Hb_014361_130--Hb_066320_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.39759 0.196716 1.93315 0.0301184 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.15667 1.50714

CAGE analysis