Hb_002685_160

Information

Type -
Description -
Location Contig2685: 151357-156836
Sequence    

Annotation

kegg
ID rcu:RCOM_1321720
description leucine-rich repeat protein, putative (EC:1.3.1.74)
nr
ID XP_002525699.1
description leucine-rich repeat protein, putative [Ricinus communis]
swissprot
ID Q8LFN2
description Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1
trembl
ID B9SI80
description Leucine-rich repeat protein, putative OS=Ricinus communis GN=RCOM_1321720 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at3g03770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27963: 151194-156756 , PASA_asmbl_27964: 151194-156756 , PASA_asmbl_27965: 151313-156575 , PASA_asmbl_27966: 154295-154710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_160 0.0 - - leucine-rich repeat protein, putative [Ricinus communis]
2 Hb_000685_020 0.0897236594 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
3 Hb_000230_360 0.1097574721 - - PREDICTED: BI1-like protein [Jatropha curcas]
4 Hb_152980_020 0.1114872016 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
5 Hb_003656_090 0.1140471354 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
6 Hb_005724_040 0.1145275027 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
7 Hb_002097_080 0.1180634117 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
8 Hb_002740_100 0.1181406665 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_000181_230 0.1235079779 - - copper ion binding protein, putative [Ricinus communis]
10 Hb_001440_010 0.1245160706 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
11 Hb_000120_320 0.1251237366 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000613_250 0.1259747112 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
13 Hb_144449_010 0.1264477665 - - Potassium transporter, putative [Ricinus communis]
14 Hb_001946_200 0.1271512737 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
15 Hb_000085_380 0.1276341073 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000342_020 0.1277431411 - - bel1 homeotic protein, putative [Ricinus communis]
17 Hb_002301_370 0.1312586694 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
18 Hb_007483_120 0.1313813563 - - 60S ribosomal protein L32A [Hevea brasiliensis]
19 Hb_001269_400 0.1333234935 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
20 Hb_073808_010 0.1341593257 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002685_160 Hb_002685_160 Hb_000685_020 Hb_000685_020 Hb_002685_160--Hb_000685_020 Hb_000230_360 Hb_000230_360 Hb_002685_160--Hb_000230_360 Hb_152980_020 Hb_152980_020 Hb_002685_160--Hb_152980_020 Hb_003656_090 Hb_003656_090 Hb_002685_160--Hb_003656_090 Hb_005724_040 Hb_005724_040 Hb_002685_160--Hb_005724_040 Hb_002097_080 Hb_002097_080 Hb_002685_160--Hb_002097_080 Hb_136033_010 Hb_136033_010 Hb_000685_020--Hb_136033_010 Hb_139461_010 Hb_139461_010 Hb_000685_020--Hb_139461_010 Hb_000685_020--Hb_152980_020 Hb_007483_120 Hb_007483_120 Hb_000685_020--Hb_007483_120 Hb_000120_320 Hb_000120_320 Hb_000685_020--Hb_000120_320 Hb_000061_310 Hb_000061_310 Hb_000230_360--Hb_000061_310 Hb_002301_370 Hb_002301_370 Hb_000230_360--Hb_002301_370 Hb_031385_010 Hb_031385_010 Hb_000230_360--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_000230_360--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_000230_360--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_000230_360--Hb_001019_160 Hb_005545_110 Hb_005545_110 Hb_152980_020--Hb_005545_110 Hb_144449_010 Hb_144449_010 Hb_152980_020--Hb_144449_010 Hb_001269_400 Hb_001269_400 Hb_152980_020--Hb_001269_400 Hb_014361_040 Hb_014361_040 Hb_152980_020--Hb_014361_040 Hb_010222_040 Hb_010222_040 Hb_152980_020--Hb_010222_040 Hb_008175_050 Hb_008175_050 Hb_003656_090--Hb_008175_050 Hb_003656_090--Hb_001440_010 Hb_003656_090--Hb_000834_220 Hb_001138_070 Hb_001138_070 Hb_003656_090--Hb_001138_070 Hb_015001_030 Hb_015001_030 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_000181_230 Hb_000181_230 Hb_005724_040--Hb_000181_230 Hb_002740_100 Hb_002740_100 Hb_005724_040--Hb_002740_100 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_005724_040--Hb_007483_120 Hb_002099_060 Hb_002099_060 Hb_005724_040--Hb_002099_060 Hb_002685_220 Hb_002685_220 Hb_002097_080--Hb_002685_220 Hb_001976_020 Hb_001976_020 Hb_002097_080--Hb_001976_020 Hb_002097_080--Hb_014361_040 Hb_098795_030 Hb_098795_030 Hb_002097_080--Hb_098795_030 Hb_000028_580 Hb_000028_580 Hb_002097_080--Hb_000028_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62607 17.6181 21.5216 43.2277 1.03096 2.53706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363184 0.17995 0.324353 20.6059 23.201

CAGE analysis