Hb_000027_170

Information

Type -
Description -
Location Contig27: 258690-271327
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13140g
description POPTRDRAFT_225428; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012082132.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
swissprot
ID Q9M9C5
description Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1
trembl
ID A0A067KC77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18370 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28139: 268300-271462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_170 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
2 Hb_004899_110 0.0955364411 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
3 Hb_004678_030 0.1085542088 - - fructokinase [Manihot esculenta]
4 Hb_000008_200 0.1281991744 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
5 Hb_001054_040 0.13468054 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
6 Hb_091318_010 0.1350646199 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
7 Hb_000316_060 0.135144897 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
8 Hb_002463_050 0.1378676858 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000654_050 0.1382241444 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
10 Hb_001019_160 0.1383517639 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004855_020 0.1389156989 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
12 Hb_000061_310 0.1468909113 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
13 Hb_000735_060 0.148549455 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
14 Hb_002311_280 0.1495734559 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_000069_300 0.1500203025 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_031385_010 0.1509817599 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
17 Hb_008511_040 0.1528730939 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_022092_110 0.1540473844 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
19 Hb_003687_040 0.1541754782 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
20 Hb_002085_090 0.1549798442 - - -

Gene co-expression network

sample Hb_000027_170 Hb_000027_170 Hb_004899_110 Hb_004899_110 Hb_000027_170--Hb_004899_110 Hb_004678_030 Hb_004678_030 Hb_000027_170--Hb_004678_030 Hb_000008_200 Hb_000008_200 Hb_000027_170--Hb_000008_200 Hb_001054_040 Hb_001054_040 Hb_000027_170--Hb_001054_040 Hb_091318_010 Hb_091318_010 Hb_000027_170--Hb_091318_010 Hb_000316_060 Hb_000316_060 Hb_000027_170--Hb_000316_060 Hb_000567_330 Hb_000567_330 Hb_004899_110--Hb_000567_330 Hb_004899_110--Hb_001054_040 Hb_002311_280 Hb_002311_280 Hb_004899_110--Hb_002311_280 Hb_089305_010 Hb_089305_010 Hb_004899_110--Hb_089305_010 Hb_004899_110--Hb_091318_010 Hb_000654_050 Hb_000654_050 Hb_004678_030--Hb_000654_050 Hb_002463_050 Hb_002463_050 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_004678_030--Hb_000061_310 Hb_005245_140 Hb_005245_140 Hb_004678_030--Hb_005245_140 Hb_005568_020 Hb_005568_020 Hb_000008_200--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_003606_050 Hb_003606_050 Hb_000008_200--Hb_003606_050 Hb_000008_200--Hb_091318_010 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160 Hb_000735_060 Hb_000735_060 Hb_000008_200--Hb_000735_060 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002639_050 Hb_002639_050 Hb_001054_040--Hb_002639_050 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130 Hb_000996_040 Hb_000996_040 Hb_000316_060--Hb_000996_040 Hb_003687_040 Hb_003687_040 Hb_000316_060--Hb_003687_040 Hb_001040_080 Hb_001040_080 Hb_000316_060--Hb_001040_080 Hb_007590_110 Hb_007590_110 Hb_000316_060--Hb_007590_110 Hb_000316_060--Hb_001019_160 Hb_002897_010 Hb_002897_010 Hb_000316_060--Hb_002897_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.528358 1.70249 3.86039 3.51265 0.0427316 0.0442329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169824 0.151465 0.205232 1.10828 1.54563

CAGE analysis