Hb_000567_330

Information

Type -
Description -
Location Contig567: 359919-364466
Sequence    

Annotation

kegg
ID rcu:RCOM_0539500
description oligopeptide transporter, putative
nr
ID XP_012084671.1
description PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
swissprot
ID Q9SHY2
description Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1
trembl
ID A0A067K4W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21006 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable metal-nicotianamine transporter ysl7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49152: 360059-361324 , PASA_asmbl_49153: 361781-362376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_330 0.0 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
2 Hb_089305_010 0.1088926482 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_007130_020 0.1169294616 - - -
4 Hb_033006_020 0.117708323 - - Aspartate aminotransferase, putative [Ricinus communis]
5 Hb_004899_110 0.1210127379 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
6 Hb_000836_090 0.1240926635 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
7 Hb_010812_060 0.1245373349 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
8 Hb_028487_040 0.1292319332 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
9 Hb_002311_280 0.1322025118 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_002609_290 0.1329656384 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
11 Hb_000071_090 0.1363426508 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
12 Hb_003688_220 0.1364701471 - - unknown [Populus trichocarpa]
13 Hb_000199_040 0.1368524331 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_005486_020 0.1409925026 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
15 Hb_000243_290 0.1411861894 - - plastidic aldolase family protein [Populus trichocarpa]
16 Hb_001627_010 0.1416352348 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
17 Hb_001307_020 0.1426115982 - - electron carrier, putative [Ricinus communis]
18 Hb_044653_050 0.1432794756 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
19 Hb_002053_180 0.1443935278 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
20 Hb_003531_050 0.1444530532 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000567_330 Hb_000567_330 Hb_089305_010 Hb_089305_010 Hb_000567_330--Hb_089305_010 Hb_007130_020 Hb_007130_020 Hb_000567_330--Hb_007130_020 Hb_033006_020 Hb_033006_020 Hb_000567_330--Hb_033006_020 Hb_004899_110 Hb_004899_110 Hb_000567_330--Hb_004899_110 Hb_000836_090 Hb_000836_090 Hb_000567_330--Hb_000836_090 Hb_010812_060 Hb_010812_060 Hb_000567_330--Hb_010812_060 Hb_000120_090 Hb_000120_090 Hb_089305_010--Hb_000120_090 Hb_001621_050 Hb_001621_050 Hb_089305_010--Hb_001621_050 Hb_089305_010--Hb_010812_060 Hb_000110_260 Hb_000110_260 Hb_089305_010--Hb_000110_260 Hb_021409_110 Hb_021409_110 Hb_089305_010--Hb_021409_110 Hb_044653_050 Hb_044653_050 Hb_007130_020--Hb_044653_050 Hb_002311_280 Hb_002311_280 Hb_007130_020--Hb_002311_280 Hb_007130_020--Hb_000836_090 Hb_006922_020 Hb_006922_020 Hb_007130_020--Hb_006922_020 Hb_007130_020--Hb_033006_020 Hb_004228_070 Hb_004228_070 Hb_007130_020--Hb_004228_070 Hb_033006_020--Hb_000836_090 Hb_000645_260 Hb_000645_260 Hb_033006_020--Hb_000645_260 Hb_033006_020--Hb_002311_280 Hb_001377_120 Hb_001377_120 Hb_033006_020--Hb_001377_120 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020 Hb_000027_170 Hb_000027_170 Hb_004899_110--Hb_000027_170 Hb_001054_040 Hb_001054_040 Hb_004899_110--Hb_001054_040 Hb_004899_110--Hb_002311_280 Hb_004899_110--Hb_089305_010 Hb_091318_010 Hb_091318_010 Hb_004899_110--Hb_091318_010 Hb_002053_180 Hb_002053_180 Hb_000836_090--Hb_002053_180 Hb_000905_100 Hb_000905_100 Hb_000836_090--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_001366_390 Hb_001366_390 Hb_010812_060--Hb_001366_390 Hb_000071_090 Hb_000071_090 Hb_010812_060--Hb_000071_090 Hb_002609_290 Hb_002609_290 Hb_010812_060--Hb_002609_290 Hb_010812_060--Hb_007130_020 Hb_001254_020 Hb_001254_020 Hb_010812_060--Hb_001254_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0367814 0.768084 1.57805 0.809619 0.0184145 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0417768 0.0657441 0.0312244 0.182974 0.661277

CAGE analysis