Hb_001882_150

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1882: 142467-142924
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_150 0.0 transcription factor TF Family: mTERF -
2 Hb_148346_010 0.1417256145 - - -
3 Hb_002539_050 0.1452602596 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
4 Hb_083493_010 0.1721771223 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_000164_150 0.173909264 - - serine/threonine-specific protein kinase, putative [Ricinus communis]
6 Hb_000003_740 0.1742855288 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
7 Hb_005694_180 0.1776707427 - - PREDICTED: cytochrome b5 [Jatropha curcas]
8 Hb_000032_430 0.1787793254 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000363_180 0.1810719546 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
10 Hb_055531_010 0.1818637223 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
11 Hb_001491_040 0.1823845668 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_186247_010 0.1832028056 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
13 Hb_001178_080 0.1842315552 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
14 Hb_003647_040 0.1842773516 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000062_490 0.1867866361 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
16 Hb_033053_020 0.1915803203 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
17 Hb_000203_070 0.1925673805 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
18 Hb_002375_060 0.1944111015 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
19 Hb_012727_010 0.195722832 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_006483_060 0.199441744 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]

Gene co-expression network

sample Hb_001882_150 Hb_001882_150 Hb_148346_010 Hb_148346_010 Hb_001882_150--Hb_148346_010 Hb_002539_050 Hb_002539_050 Hb_001882_150--Hb_002539_050 Hb_083493_010 Hb_083493_010 Hb_001882_150--Hb_083493_010 Hb_000164_150 Hb_000164_150 Hb_001882_150--Hb_000164_150 Hb_000003_740 Hb_000003_740 Hb_001882_150--Hb_000003_740 Hb_005694_180 Hb_005694_180 Hb_001882_150--Hb_005694_180 Hb_148346_010--Hb_002539_050 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_010315_100 Hb_010315_100 Hb_148346_010--Hb_010315_100 Hb_148346_010--Hb_000003_740 Hb_186247_010 Hb_186247_010 Hb_002539_050--Hb_186247_010 Hb_003929_190 Hb_003929_190 Hb_002539_050--Hb_003929_190 Hb_000363_180 Hb_000363_180 Hb_002539_050--Hb_000363_180 Hb_002539_050--Hb_010315_100 Hb_004631_170 Hb_004631_170 Hb_002539_050--Hb_004631_170 Hb_001688_070 Hb_001688_070 Hb_083493_010--Hb_001688_070 Hb_009745_010 Hb_009745_010 Hb_083493_010--Hb_009745_010 Hb_000203_070 Hb_000203_070 Hb_083493_010--Hb_000203_070 Hb_012308_050 Hb_012308_050 Hb_083493_010--Hb_012308_050 Hb_083493_010--Hb_000363_180 Hb_187021_010 Hb_187021_010 Hb_083493_010--Hb_187021_010 Hb_000164_150--Hb_148346_010 Hb_006831_080 Hb_006831_080 Hb_000164_150--Hb_006831_080 Hb_000164_150--Hb_083493_010 Hb_000085_380 Hb_000085_380 Hb_000164_150--Hb_000085_380 Hb_000685_020 Hb_000685_020 Hb_000164_150--Hb_000685_020 Hb_002518_200 Hb_002518_200 Hb_000003_740--Hb_002518_200 Hb_000692_210 Hb_000692_210 Hb_000003_740--Hb_000692_210 Hb_004920_050 Hb_004920_050 Hb_000003_740--Hb_004920_050 Hb_114943_020 Hb_114943_020 Hb_000003_740--Hb_114943_020 Hb_000015_150 Hb_000015_150 Hb_000003_740--Hb_000015_150 Hb_003430_080 Hb_003430_080 Hb_005694_180--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_005694_180--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_005694_180--Hb_001195_420 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398946 3.94784 4.77313 8.07731 0.961393 1.2165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.217286 3.40575 0.956605

CAGE analysis