Hb_083493_010

Information

Type -
Description -
Location Contig83493: 7816-9565
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083493_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_001688_070 0.1383819029 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
3 Hb_009745_010 0.1498448627 - - cellulose synthase-like protein [Populus tomentosa]
4 Hb_000203_070 0.1523826864 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
5 Hb_012308_050 0.1536737736 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
6 Hb_000363_180 0.1600320671 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
7 Hb_187021_010 0.1647932791 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_007483_120 0.1668494823 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_000654_050 0.168733027 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
10 Hb_000015_150 0.1690639396 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
11 Hb_000164_150 0.1692504465 - - serine/threonine-specific protein kinase, putative [Ricinus communis]
12 Hb_148346_010 0.1697788551 - - -
13 Hb_029576_010 0.1708766865 - - PREDICTED: B-cell receptor-associated protein 31-like [Glycine max]
14 Hb_001522_040 0.171397125 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_001882_150 0.1721771223 transcription factor TF Family: mTERF -
16 Hb_002539_050 0.1752017302 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_003929_190 0.1795693934 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
18 Hb_000320_270 0.1836430692 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
19 Hb_000196_010 0.1837131671 - - Patellin-5, putative [Ricinus communis]
20 Hb_034507_060 0.1848109075 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]

Gene co-expression network

sample Hb_083493_010 Hb_083493_010 Hb_001688_070 Hb_001688_070 Hb_083493_010--Hb_001688_070 Hb_009745_010 Hb_009745_010 Hb_083493_010--Hb_009745_010 Hb_000203_070 Hb_000203_070 Hb_083493_010--Hb_000203_070 Hb_012308_050 Hb_012308_050 Hb_083493_010--Hb_012308_050 Hb_000363_180 Hb_000363_180 Hb_083493_010--Hb_000363_180 Hb_187021_010 Hb_187021_010 Hb_083493_010--Hb_187021_010 Hb_000062_490 Hb_000062_490 Hb_001688_070--Hb_000062_490 Hb_000567_350 Hb_000567_350 Hb_001688_070--Hb_000567_350 Hb_008112_010 Hb_008112_010 Hb_001688_070--Hb_008112_010 Hb_001688_070--Hb_187021_010 Hb_012743_010 Hb_012743_010 Hb_001688_070--Hb_012743_010 Hb_000196_010 Hb_000196_010 Hb_009745_010--Hb_000196_010 Hb_009745_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_009745_010--Hb_002909_100 Hb_001522_040 Hb_001522_040 Hb_009745_010--Hb_001522_040 Hb_052117_010 Hb_052117_010 Hb_009745_010--Hb_052117_010 Hb_001898_020 Hb_001898_020 Hb_009745_010--Hb_001898_020 Hb_000776_040 Hb_000776_040 Hb_000203_070--Hb_000776_040 Hb_001178_090 Hb_001178_090 Hb_000203_070--Hb_001178_090 Hb_034507_060 Hb_034507_060 Hb_000203_070--Hb_034507_060 Hb_005333_080 Hb_005333_080 Hb_000203_070--Hb_005333_080 Hb_000085_380 Hb_000085_380 Hb_000203_070--Hb_000085_380 Hb_012760_090 Hb_012760_090 Hb_000203_070--Hb_012760_090 Hb_007483_120 Hb_007483_120 Hb_012308_050--Hb_007483_120 Hb_002510_100 Hb_002510_100 Hb_012308_050--Hb_002510_100 Hb_000654_050 Hb_000654_050 Hb_012308_050--Hb_000654_050 Hb_002849_180 Hb_002849_180 Hb_012308_050--Hb_002849_180 Hb_005724_040 Hb_005724_040 Hb_012308_050--Hb_005724_040 Hb_000320_270 Hb_000320_270 Hb_012308_050--Hb_000320_270 Hb_000363_180--Hb_000196_010 Hb_000732_230 Hb_000732_230 Hb_000363_180--Hb_000732_230 Hb_000950_040 Hb_000950_040 Hb_000363_180--Hb_000950_040 Hb_001195_420 Hb_001195_420 Hb_000363_180--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_000363_180--Hb_001009_150 Hb_035761_010 Hb_035761_010 Hb_187021_010--Hb_035761_010 Hb_000422_130 Hb_000422_130 Hb_187021_010--Hb_000422_130 Hb_000099_190 Hb_000099_190 Hb_187021_010--Hb_000099_190 Hb_005016_020 Hb_005016_020 Hb_187021_010--Hb_005016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194424 0.698794 0.878725 1.20964 0.0274989 0.243768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0986863 0.410169 0.384524

CAGE analysis