Hb_001688_070

Information

Type -
Description -
Location Contig1688: 83484-88865
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05040g
description POPTRDRAFT_569797; hypothetical protein
nr
ID XP_012075448.1
description PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
swissprot
ID B9I2J6
description L-Ala-D/L-amino acid epimerase OS=Populus trichocarpa GN=POPTR_0012s05040g PE=3 SV=2
trembl
ID A0A067KSD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10719 PE=4 SV=1
Gene Ontology
ID GO:0000287
description l-ala-d l-amino acid epimerase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15636: 85977-88786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001688_070 0.0 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
2 Hb_083493_010 0.1383819029 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_000062_490 0.1745155077 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
4 Hb_000567_350 0.1807798903 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
5 Hb_008112_010 0.1818016088 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
6 Hb_187021_010 0.1853730911 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_012743_010 0.188847235 - - phosphate transporter [Manihot esculenta]
8 Hb_029576_010 0.1889704497 - - PREDICTED: B-cell receptor-associated protein 31-like [Glycine max]
9 Hb_009745_010 0.1900621284 - - cellulose synthase-like protein [Populus tomentosa]
10 Hb_000094_250 0.1998806711 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
11 Hb_000363_180 0.2036042105 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
12 Hb_005016_020 0.2047100065 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
13 Hb_000735_140 0.2061586533 - - 3-glucanase family protein [Populus trichocarpa]
14 Hb_001178_080 0.2063640107 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
15 Hb_056196_060 0.2065039297 - - hexokinase [Manihot esculenta]
16 Hb_001522_040 0.208409389 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_005064_070 0.2084703258 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
18 Hb_114943_020 0.208852914 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
19 Hb_003449_030 0.2101996653 - - PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
20 Hb_000242_030 0.2114089459 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]

Gene co-expression network

sample Hb_001688_070 Hb_001688_070 Hb_083493_010 Hb_083493_010 Hb_001688_070--Hb_083493_010 Hb_000062_490 Hb_000062_490 Hb_001688_070--Hb_000062_490 Hb_000567_350 Hb_000567_350 Hb_001688_070--Hb_000567_350 Hb_008112_010 Hb_008112_010 Hb_001688_070--Hb_008112_010 Hb_187021_010 Hb_187021_010 Hb_001688_070--Hb_187021_010 Hb_012743_010 Hb_012743_010 Hb_001688_070--Hb_012743_010 Hb_009745_010 Hb_009745_010 Hb_083493_010--Hb_009745_010 Hb_000203_070 Hb_000203_070 Hb_083493_010--Hb_000203_070 Hb_012308_050 Hb_012308_050 Hb_083493_010--Hb_012308_050 Hb_000363_180 Hb_000363_180 Hb_083493_010--Hb_000363_180 Hb_083493_010--Hb_187021_010 Hb_000692_030 Hb_000692_030 Hb_000062_490--Hb_000692_030 Hb_012727_010 Hb_012727_010 Hb_000062_490--Hb_012727_010 Hb_000094_250 Hb_000094_250 Hb_000062_490--Hb_000094_250 Hb_000094_120 Hb_000094_120 Hb_000062_490--Hb_000094_120 Hb_001178_080 Hb_001178_080 Hb_000062_490--Hb_001178_080 Hb_006615_160 Hb_006615_160 Hb_000062_490--Hb_006615_160 Hb_000567_350--Hb_000094_250 Hb_003449_030 Hb_003449_030 Hb_000567_350--Hb_003449_030 Hb_000567_350--Hb_000062_490 Hb_000567_350--Hb_000094_120 Hb_000735_140 Hb_000735_140 Hb_000567_350--Hb_000735_140 Hb_000009_200 Hb_000009_200 Hb_008112_010--Hb_000009_200 Hb_056196_060 Hb_056196_060 Hb_008112_010--Hb_056196_060 Hb_005714_100 Hb_005714_100 Hb_008112_010--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_008112_010--Hb_000035_050 Hb_001085_300 Hb_001085_300 Hb_008112_010--Hb_001085_300 Hb_008112_010--Hb_000735_140 Hb_035761_010 Hb_035761_010 Hb_187021_010--Hb_035761_010 Hb_000422_130 Hb_000422_130 Hb_187021_010--Hb_000422_130 Hb_000099_190 Hb_000099_190 Hb_187021_010--Hb_000099_190 Hb_005016_020 Hb_005016_020 Hb_187021_010--Hb_005016_020 Hb_002233_080 Hb_002233_080 Hb_012743_010--Hb_002233_080 Hb_000532_150 Hb_000532_150 Hb_012743_010--Hb_000532_150 Hb_012272_010 Hb_012272_010 Hb_012743_010--Hb_012272_010 Hb_001329_080 Hb_001329_080 Hb_012743_010--Hb_001329_080 Hb_076771_010 Hb_076771_010 Hb_012743_010--Hb_076771_010 Hb_001472_140 Hb_001472_140 Hb_012743_010--Hb_001472_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187506 0.72814 0.684205 0.90539 0 0.17542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0408146 0 0.179127 0.308694 0.199275

CAGE analysis