Hb_000692_030

Information

Type -
Description -
Location Contig692: 42717-45882
Sequence    

Annotation

kegg
ID rcu:RCOM_1599380
description nucleoredoxin, putative
nr
ID XP_002510593.1
description nucleoredoxin, putative [Ricinus communis]
swissprot
ID Q0JIL1
description Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1
trembl
ID B9R8F0
description Nucleoredoxin, putative OS=Ricinus communis GN=RCOM_1599380 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable nucleoredoxin 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54438: 42904-45685 , PASA_asmbl_54440: 44163-44488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_030 0.0 - - nucleoredoxin, putative [Ricinus communis]
2 Hb_000062_490 0.1111356722 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
3 Hb_042491_010 0.1554262982 - - JHL06P13.14 [Jatropha curcas]
4 Hb_001277_420 0.1667936635 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
5 Hb_012727_010 0.1675332509 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_028841_010 0.1727063039 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
7 Hb_003579_040 0.1772039346 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
8 Hb_120117_010 0.1791707302 - - Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_036176_010 0.1816668319 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
10 Hb_002119_040 0.181828809 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_000094_120 0.1828539994 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
12 Hb_003025_150 0.1861371889 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005695_020 0.1866096739 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
14 Hb_139139_010 0.1895155969 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_002000_090 0.1897445736 - - 60S ribosomal protein L3B [Hevea brasiliensis]
16 Hb_004659_100 0.1924299293 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005087_030 0.1932788194 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
18 Hb_003216_020 0.1936917712 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
19 Hb_003449_030 0.1939727693 - - PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
20 Hb_008959_050 0.1942585973 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000692_030 Hb_000692_030 Hb_000062_490 Hb_000062_490 Hb_000692_030--Hb_000062_490 Hb_042491_010 Hb_042491_010 Hb_000692_030--Hb_042491_010 Hb_001277_420 Hb_001277_420 Hb_000692_030--Hb_001277_420 Hb_012727_010 Hb_012727_010 Hb_000692_030--Hb_012727_010 Hb_028841_010 Hb_028841_010 Hb_000692_030--Hb_028841_010 Hb_003579_040 Hb_003579_040 Hb_000692_030--Hb_003579_040 Hb_000062_490--Hb_012727_010 Hb_000094_250 Hb_000094_250 Hb_000062_490--Hb_000094_250 Hb_000094_120 Hb_000094_120 Hb_000062_490--Hb_000094_120 Hb_001178_080 Hb_001178_080 Hb_000062_490--Hb_001178_080 Hb_006615_160 Hb_006615_160 Hb_000062_490--Hb_006615_160 Hb_036176_010 Hb_036176_010 Hb_042491_010--Hb_036176_010 Hb_038718_010 Hb_038718_010 Hb_042491_010--Hb_038718_010 Hb_004218_220 Hb_004218_220 Hb_042491_010--Hb_004218_220 Hb_000189_070 Hb_000189_070 Hb_042491_010--Hb_000189_070 Hb_011206_050 Hb_011206_050 Hb_042491_010--Hb_011206_050 Hb_033053_020 Hb_033053_020 Hb_042491_010--Hb_033053_020 Hb_006550_010 Hb_006550_010 Hb_001277_420--Hb_006550_010 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_183209_020 Hb_183209_020 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_012727_010--Hb_003579_040 Hb_177215_020 Hb_177215_020 Hb_028841_010--Hb_177215_020 Hb_004631_100 Hb_004631_100 Hb_028841_010--Hb_004631_100 Hb_002325_050 Hb_002325_050 Hb_028841_010--Hb_002325_050 Hb_002676_110 Hb_002676_110 Hb_028841_010--Hb_002676_110 Hb_003849_200 Hb_003849_200 Hb_028841_010--Hb_003849_200 Hb_002888_100 Hb_002888_100 Hb_028841_010--Hb_002888_100 Hb_003579_040--Hb_003025_150 Hb_003579_040--Hb_002324_040 Hb_000111_190 Hb_000111_190 Hb_003579_040--Hb_000111_190 Hb_000914_110 Hb_000914_110 Hb_003579_040--Hb_000914_110 Hb_004544_090 Hb_004544_090 Hb_003579_040--Hb_004544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.316876 20.5314 12.0282 28.3513 0.0781182 1.63914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152262 0.089832 3.79791 13.8412 1.9888

CAGE analysis