Hb_000189_070

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig189: 109080-110249
Sequence    

Annotation

kegg
ID rcu:RCOM_0484480
description Auxin-induced protein 22D, putative
nr
ID XP_002531289.1
description Auxin-induced protein 22D, putative [Ricinus communis]
swissprot
ID O24542
description Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1
trembl
ID B9SZ70
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0484480 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-induced protein 22d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18641: 109077-110464 , PASA_asmbl_18642: 109866-110228
cDNA
(Sanger)
(ID:Location)		 020_E21.ab1: 109077-110050 , 039_K15.ab1: 109077-110042

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_070 0.0 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
2 Hb_042491_010 0.1435236784 - - JHL06P13.14 [Jatropha curcas]
3 Hb_003647_040 0.1457298241 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033053_020 0.1695643381 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
5 Hb_012727_010 0.1709521374 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_036176_010 0.1743106553 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
7 Hb_032050_070 0.175444582 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_002053_090 0.1801784423 - - conserved hypothetical protein [Ricinus communis]
9 Hb_038718_010 0.183405987 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_005237_070 0.186169477 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
11 Hb_002119_040 0.1868455699 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_003579_040 0.1875765226 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
13 Hb_011206_050 0.1879614498 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
14 Hb_006483_060 0.1885665885 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
15 Hb_001277_420 0.1886015253 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
16 Hb_002289_110 0.1917137362 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
17 Hb_000270_550 0.192782737 - - -
18 Hb_001491_040 0.1928454421 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_000866_320 0.1929179451 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_009838_120 0.1939323422 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_070 Hb_000189_070 Hb_042491_010 Hb_042491_010 Hb_000189_070--Hb_042491_010 Hb_003647_040 Hb_003647_040 Hb_000189_070--Hb_003647_040 Hb_033053_020 Hb_033053_020 Hb_000189_070--Hb_033053_020 Hb_012727_010 Hb_012727_010 Hb_000189_070--Hb_012727_010 Hb_036176_010 Hb_036176_010 Hb_000189_070--Hb_036176_010 Hb_032050_070 Hb_032050_070 Hb_000189_070--Hb_032050_070 Hb_042491_010--Hb_036176_010 Hb_038718_010 Hb_038718_010 Hb_042491_010--Hb_038718_010 Hb_004218_220 Hb_004218_220 Hb_042491_010--Hb_004218_220 Hb_011206_050 Hb_011206_050 Hb_042491_010--Hb_011206_050 Hb_042491_010--Hb_033053_020 Hb_003647_040--Hb_012727_010 Hb_001491_040 Hb_001491_040 Hb_003647_040--Hb_001491_040 Hb_002119_040 Hb_002119_040 Hb_003647_040--Hb_002119_040 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_004659_100 Hb_004659_100 Hb_033053_020--Hb_004659_100 Hb_087427_010 Hb_087427_010 Hb_033053_020--Hb_087427_010 Hb_004631_100 Hb_004631_100 Hb_033053_020--Hb_004631_100 Hb_000631_100 Hb_000631_100 Hb_033053_020--Hb_000631_100 Hb_033053_020--Hb_038718_010 Hb_008021_040 Hb_008021_040 Hb_033053_020--Hb_008021_040 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_036176_010--Hb_011206_050 Hb_002044_110 Hb_002044_110 Hb_036176_010--Hb_002044_110 Hb_002217_210 Hb_002217_210 Hb_036176_010--Hb_002217_210 Hb_005144_100 Hb_005144_100 Hb_036176_010--Hb_005144_100 Hb_003216_020 Hb_003216_020 Hb_032050_070--Hb_003216_020 Hb_019040_010 Hb_019040_010 Hb_032050_070--Hb_019040_010 Hb_003602_090 Hb_003602_090 Hb_032050_070--Hb_003602_090 Hb_001628_030 Hb_001628_030 Hb_032050_070--Hb_001628_030 Hb_009510_050 Hb_009510_050 Hb_032050_070--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_032050_070--Hb_000723_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0585 183.093 80.2038 339.376 21.9504 2.71059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0937618 0 7.83625 134.3 11.7431

CAGE analysis