Hb_001491_040

Information

Type -
Description -
Location Contig1491: 50603-52537
Sequence    

Annotation

kegg
ID rcu:RCOM_0699180
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012092456.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067JBV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21728 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12410: 51850-52089 , PASA_asmbl_12411: 52323-52474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001491_040 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_003647_040 0.117188535 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002119_040 0.1207392512 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_002000_090 0.1594728731 - - 60S ribosomal protein L3B [Hevea brasiliensis]
5 Hb_005694_180 0.1655752969 - - PREDICTED: cytochrome b5 [Jatropha curcas]
6 Hb_002235_410 0.1660119727 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
7 Hb_004586_330 0.1696022478 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000866_320 0.1774478875 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_006483_060 0.1804740914 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
10 Hb_001882_150 0.1823845668 transcription factor TF Family: mTERF -
11 Hb_002539_050 0.1856924779 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
12 Hb_001054_090 0.1870264174 - - Potassium channel SKOR, putative [Ricinus communis]
13 Hb_000002_360 0.1879313675 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
14 Hb_012760_090 0.1881906935 - - Aspartic proteinase-like protein 1 [Morus notabilis]
15 Hb_000320_030 0.1881976436 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
16 Hb_007044_220 0.1882173876 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_012727_010 0.1885188709 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_127416_010 0.1892726812 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
19 Hb_034507_060 0.1919207359 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
20 Hb_000189_070 0.1928454421 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]

Gene co-expression network

sample Hb_001491_040 Hb_001491_040 Hb_003647_040 Hb_003647_040 Hb_001491_040--Hb_003647_040 Hb_002119_040 Hb_002119_040 Hb_001491_040--Hb_002119_040 Hb_002000_090 Hb_002000_090 Hb_001491_040--Hb_002000_090 Hb_005694_180 Hb_005694_180 Hb_001491_040--Hb_005694_180 Hb_002235_410 Hb_002235_410 Hb_001491_040--Hb_002235_410 Hb_004586_330 Hb_004586_330 Hb_001491_040--Hb_004586_330 Hb_012727_010 Hb_012727_010 Hb_003647_040--Hb_012727_010 Hb_003647_040--Hb_002119_040 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_002119_040--Hb_012727_010 Hb_002324_040 Hb_002324_040 Hb_002119_040--Hb_002324_040 Hb_000002_360 Hb_000002_360 Hb_002119_040--Hb_000002_360 Hb_002119_040--Hb_002000_090 Hb_002284_080 Hb_002284_080 Hb_002000_090--Hb_002284_080 Hb_001353_020 Hb_001353_020 Hb_002000_090--Hb_001353_020 Hb_012760_090 Hb_012760_090 Hb_002000_090--Hb_012760_090 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140 Hb_003430_080 Hb_003430_080 Hb_005694_180--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_005694_180--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_005694_180--Hb_001195_420 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_005694_180--Hb_012760_090 Hb_005618_090 Hb_005618_090 Hb_002235_410--Hb_005618_090 Hb_000637_020 Hb_000637_020 Hb_002235_410--Hb_000637_020 Hb_003670_030 Hb_003670_030 Hb_002235_410--Hb_003670_030 Hb_002374_270 Hb_002374_270 Hb_002235_410--Hb_002374_270 Hb_000940_210 Hb_000940_210 Hb_002235_410--Hb_000940_210 Hb_000302_100 Hb_000302_100 Hb_004586_330--Hb_000302_100 Hb_004586_330--Hb_003647_040 Hb_018118_030 Hb_018118_030 Hb_004586_330--Hb_018118_030 Hb_066514_010 Hb_066514_010 Hb_004586_330--Hb_066514_010 Hb_002675_090 Hb_002675_090 Hb_004586_330--Hb_002675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0642718 0.747045 0.799189 1.98353 0.217504 0.0469343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468249 0.0736854 0.174505 0.740449 0.15557

CAGE analysis