Hb_005618_090

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig5618: 73446-74243
Sequence    

Annotation

kegg
ID rcu:RCOM_1343160
description Auxin-responsive protein IAA20, putative
nr
ID XP_002515174.1
description Auxin-responsive protein IAA20, putative [Ricinus communis]
swissprot
ID Q9M1R4
description Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1
trembl
ID B9RN35
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_1343160 PE=3 SV=1
Gene Ontology
ID GO:0005634
description aux iaa family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_090 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
2 Hb_047583_010 0.1363034671 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
3 Hb_002235_060 0.1549083639 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
4 Hb_001493_090 0.1583272656 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018272_060 0.162073624 - - PREDICTED: mavicyanin-like [Citrus sinensis]
6 Hb_002235_410 0.1666001642 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
7 Hb_001054_090 0.1723442462 - - Potassium channel SKOR, putative [Ricinus communis]
8 Hb_003670_030 0.1812210297 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
9 Hb_002119_040 0.1844600741 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_004116_070 0.1869660864 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
11 Hb_147245_010 0.1879502 - - casein kinase, putative [Ricinus communis]
12 Hb_001053_210 0.1885436133 - - -
13 Hb_028487_130 0.191068347 - - kinase family protein [Populus trichocarpa]
14 Hb_001366_060 0.1912493089 - - -
15 Hb_000735_080 0.1914442634 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
16 Hb_009646_010 0.1947456915 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
17 Hb_001135_030 0.1951391282 - - PREDICTED: interaptin-like [Jatropha curcas]
18 Hb_000940_210 0.195715293 - - cyclophilin [Hevea brasiliensis]
19 Hb_003430_080 0.2007958394 - - zinc finger protein, putative [Ricinus communis]
20 Hb_002641_160 0.2010180789 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005618_090 Hb_005618_090 Hb_047583_010 Hb_047583_010 Hb_005618_090--Hb_047583_010 Hb_002235_060 Hb_002235_060 Hb_005618_090--Hb_002235_060 Hb_001493_090 Hb_001493_090 Hb_005618_090--Hb_001493_090 Hb_018272_060 Hb_018272_060 Hb_005618_090--Hb_018272_060 Hb_002235_410 Hb_002235_410 Hb_005618_090--Hb_002235_410 Hb_001054_090 Hb_001054_090 Hb_005618_090--Hb_001054_090 Hb_047583_010--Hb_001054_090 Hb_047583_010--Hb_018272_060 Hb_002325_060 Hb_002325_060 Hb_047583_010--Hb_002325_060 Hb_000062_660 Hb_000062_660 Hb_047583_010--Hb_000062_660 Hb_047583_010--Hb_002235_060 Hb_147245_010 Hb_147245_010 Hb_002235_060--Hb_147245_010 Hb_002374_270 Hb_002374_270 Hb_002235_060--Hb_002374_270 Hb_000922_320 Hb_000922_320 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002235_060--Hb_002325_060 Hb_000928_120 Hb_000928_120 Hb_002235_060--Hb_000928_120 Hb_001493_090--Hb_147245_010 Hb_001493_090--Hb_002235_060 Hb_001898_140 Hb_001898_140 Hb_001493_090--Hb_001898_140 Hb_001545_130 Hb_001545_130 Hb_001493_090--Hb_001545_130 Hb_001053_210 Hb_001053_210 Hb_001493_090--Hb_001053_210 Hb_000645_200 Hb_000645_200 Hb_018272_060--Hb_000645_200 Hb_018272_060--Hb_000062_660 Hb_009557_030 Hb_009557_030 Hb_018272_060--Hb_009557_030 Hb_172632_050 Hb_172632_050 Hb_018272_060--Hb_172632_050 Hb_001491_040 Hb_001491_040 Hb_002235_410--Hb_001491_040 Hb_000637_020 Hb_000637_020 Hb_002235_410--Hb_000637_020 Hb_003670_030 Hb_003670_030 Hb_002235_410--Hb_003670_030 Hb_002235_410--Hb_002374_270 Hb_000940_210 Hb_000940_210 Hb_002235_410--Hb_000940_210 Hb_004522_030 Hb_004522_030 Hb_001054_090--Hb_004522_030 Hb_009646_010 Hb_009646_010 Hb_001054_090--Hb_009646_010 Hb_003710_020 Hb_003710_020 Hb_001054_090--Hb_003710_020 Hb_001014_190 Hb_001014_190 Hb_001054_090--Hb_001014_190 Hb_080477_080 Hb_080477_080 Hb_001054_090--Hb_080477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175597 1.32472 1.3978 2.60209 0.352657 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.750976 0.393352 0.336036 1.14032 0.371086

CAGE analysis