Hb_000062_660

Information

Type -
Description -
Location Contig62: 480721-481650
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03470g
description POPTRDRAFT_558090; hypothetical protein
nr
ID XP_002314190.1
description hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HPI8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s03470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_660 0.0 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
2 Hb_147245_010 0.1306543448 - - casein kinase, putative [Ricinus communis]
3 Hb_001486_040 0.1384831022 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
4 Hb_002235_060 0.1398714931 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
5 Hb_001474_020 0.1405810806 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
6 Hb_000861_100 0.1489318188 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
7 Hb_000057_130 0.1493096802 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
8 Hb_185830_060 0.1506811913 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
9 Hb_029920_060 0.1510894042 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
10 Hb_047583_010 0.1518422103 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
11 Hb_002217_500 0.1532605409 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
12 Hb_000007_200 0.1541821277 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
13 Hb_132840_160 0.1556226673 - - conserved hypothetical protein [Ricinus communis]
14 Hb_018272_060 0.1558804638 - - PREDICTED: mavicyanin-like [Citrus sinensis]
15 Hb_003371_070 0.1563204302 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
16 Hb_048476_060 0.1564559551 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
17 Hb_002046_060 0.1564652397 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_000922_320 0.15693802 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
19 Hb_004218_120 0.1585736715 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
20 Hb_001998_200 0.1603900046 - - UDP-glucose 4-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000062_660 Hb_000062_660 Hb_147245_010 Hb_147245_010 Hb_000062_660--Hb_147245_010 Hb_001486_040 Hb_001486_040 Hb_000062_660--Hb_001486_040 Hb_002235_060 Hb_002235_060 Hb_000062_660--Hb_002235_060 Hb_001474_020 Hb_001474_020 Hb_000062_660--Hb_001474_020 Hb_000861_100 Hb_000861_100 Hb_000062_660--Hb_000861_100 Hb_000057_130 Hb_000057_130 Hb_000062_660--Hb_000057_130 Hb_147245_010--Hb_002235_060 Hb_001545_130 Hb_001545_130 Hb_147245_010--Hb_001545_130 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_000928_120 Hb_000928_120 Hb_147245_010--Hb_000928_120 Hb_004109_050 Hb_004109_050 Hb_147245_010--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_147245_010--Hb_000152_710 Hb_185830_060 Hb_185830_060 Hb_001486_040--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_001486_040--Hb_003207_020 Hb_010042_020 Hb_010042_020 Hb_001486_040--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_001486_040--Hb_033152_070 Hb_002193_060 Hb_002193_060 Hb_001486_040--Hb_002193_060 Hb_002955_020 Hb_002955_020 Hb_001486_040--Hb_002955_020 Hb_002374_270 Hb_002374_270 Hb_002235_060--Hb_002374_270 Hb_000922_320 Hb_000922_320 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002325_060 Hb_002325_060 Hb_002235_060--Hb_002325_060 Hb_002235_060--Hb_000928_120 Hb_011360_110 Hb_011360_110 Hb_001474_020--Hb_011360_110 Hb_132840_160 Hb_132840_160 Hb_001474_020--Hb_132840_160 Hb_002046_060 Hb_002046_060 Hb_001474_020--Hb_002046_060 Hb_002217_500 Hb_002217_500 Hb_001474_020--Hb_002217_500 Hb_006469_070 Hb_006469_070 Hb_001474_020--Hb_006469_070 Hb_023344_110 Hb_023344_110 Hb_001474_020--Hb_023344_110 Hb_000861_100--Hb_000057_130 Hb_007229_050 Hb_007229_050 Hb_000861_100--Hb_007229_050 Hb_003371_070 Hb_003371_070 Hb_000861_100--Hb_003371_070 Hb_000861_100--Hb_007537_030 Hb_005305_120 Hb_005305_120 Hb_000861_100--Hb_005305_120 Hb_004129_010 Hb_004129_010 Hb_000861_100--Hb_004129_010 Hb_000057_130--Hb_003371_070 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000057_130--Hb_000922_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.877 5.02729 5.61627 13.0864 0.62713 0.606769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27403 3.31817 1.27933 3.76436 5.50738

CAGE analysis