Hb_001493_090

Information

Type -
Description -
Location Contig1493: 65809-66715
Sequence    

Annotation

kegg
ID rcu:RCOM_0333370
description hypothetical protein
nr
ID XP_002533815.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6E6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0333370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12435: 66011-66182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_147245_010 0.144053636 - - casein kinase, putative [Ricinus communis]
3 Hb_002235_060 0.1522628848 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
4 Hb_005618_090 0.1583272656 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
5 Hb_001898_140 0.1742492809 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
6 Hb_001545_130 0.1742868032 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_001053_210 0.1757571235 - - -
8 Hb_006569_060 0.1777478061 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
9 Hb_003710_020 0.1791550437 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
10 Hb_132840_160 0.183207542 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002641_160 0.1832470533 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000740_090 0.1834970982 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002374_270 0.1855961773 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004522_030 0.185817967 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
15 Hb_026527_010 0.1862684307 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
16 Hb_012362_030 0.1866760738 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
17 Hb_080477_080 0.1868073194 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
18 Hb_000928_120 0.1876315794 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
19 Hb_000062_530 0.1876805759 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
20 Hb_002119_040 0.1895847951 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001493_090 Hb_001493_090 Hb_147245_010 Hb_147245_010 Hb_001493_090--Hb_147245_010 Hb_002235_060 Hb_002235_060 Hb_001493_090--Hb_002235_060 Hb_005618_090 Hb_005618_090 Hb_001493_090--Hb_005618_090 Hb_001898_140 Hb_001898_140 Hb_001493_090--Hb_001898_140 Hb_001545_130 Hb_001545_130 Hb_001493_090--Hb_001545_130 Hb_001053_210 Hb_001053_210 Hb_001493_090--Hb_001053_210 Hb_147245_010--Hb_002235_060 Hb_147245_010--Hb_001545_130 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_000928_120 Hb_000928_120 Hb_147245_010--Hb_000928_120 Hb_004109_050 Hb_004109_050 Hb_147245_010--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_147245_010--Hb_000152_710 Hb_002374_270 Hb_002374_270 Hb_002235_060--Hb_002374_270 Hb_000922_320 Hb_000922_320 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002325_060 Hb_002325_060 Hb_002235_060--Hb_002325_060 Hb_002235_060--Hb_000928_120 Hb_047583_010 Hb_047583_010 Hb_005618_090--Hb_047583_010 Hb_005618_090--Hb_002235_060 Hb_018272_060 Hb_018272_060 Hb_005618_090--Hb_018272_060 Hb_002235_410 Hb_002235_410 Hb_005618_090--Hb_002235_410 Hb_001054_090 Hb_001054_090 Hb_005618_090--Hb_001054_090 Hb_000975_200 Hb_000975_200 Hb_001898_140--Hb_000975_200 Hb_002097_140 Hb_002097_140 Hb_001898_140--Hb_002097_140 Hb_031089_020 Hb_031089_020 Hb_001898_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_001898_140--Hb_080477_080 Hb_005784_060 Hb_005784_060 Hb_001898_140--Hb_005784_060 Hb_122940_010 Hb_122940_010 Hb_001898_140--Hb_122940_010 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_000740_090 Hb_000740_090 Hb_001053_210--Hb_000740_090 Hb_000940_210 Hb_000940_210 Hb_001053_210--Hb_000940_210 Hb_003430_080 Hb_003430_080 Hb_001053_210--Hb_003430_080 Hb_023226_030 Hb_023226_030 Hb_001053_210--Hb_023226_030 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.411772 1.0738 1.50922 4.25412 0.174011 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.689169 0.216561 0.548469 1.082 0.806759

CAGE analysis