Hb_047583_010

Information

Type -
Description -
Location Contig47583: 1042-1449
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12810g
description POPTRDRAFT_820662; hydroxyproline-rich glycoprotein
nr
ID XP_002311500.2
description hydroxyproline-rich glycoprotein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJA6
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s12810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44500: 1322-1607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047583_010 0.0 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
2 Hb_001054_090 0.1277314171 - - Potassium channel SKOR, putative [Ricinus communis]
3 Hb_018272_060 0.1336787037 - - PREDICTED: mavicyanin-like [Citrus sinensis]
4 Hb_005618_090 0.1363034671 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
5 Hb_002325_060 0.1512598038 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
6 Hb_000062_660 0.1518422103 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
7 Hb_002235_060 0.1626408527 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
8 Hb_002349_030 0.1631384921 - - conserved hypothetical protein [Ricinus communis]
9 Hb_028487_130 0.1644295894 - - kinase family protein [Populus trichocarpa]
10 Hb_001053_210 0.1660528348 - - -
11 Hb_000057_130 0.167081152 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
12 Hb_147245_010 0.1691700695 - - casein kinase, putative [Ricinus communis]
13 Hb_000622_330 0.1692488581 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
14 Hb_004218_120 0.1693244237 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
15 Hb_002849_070 0.1710393525 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
16 Hb_001329_270 0.1767116651 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
17 Hb_000740_090 0.1775198408 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003670_030 0.1775820204 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
19 Hb_009646_010 0.1782013114 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
20 Hb_002739_120 0.1787465159 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_047583_010 Hb_047583_010 Hb_001054_090 Hb_001054_090 Hb_047583_010--Hb_001054_090 Hb_018272_060 Hb_018272_060 Hb_047583_010--Hb_018272_060 Hb_005618_090 Hb_005618_090 Hb_047583_010--Hb_005618_090 Hb_002325_060 Hb_002325_060 Hb_047583_010--Hb_002325_060 Hb_000062_660 Hb_000062_660 Hb_047583_010--Hb_000062_660 Hb_002235_060 Hb_002235_060 Hb_047583_010--Hb_002235_060 Hb_004522_030 Hb_004522_030 Hb_001054_090--Hb_004522_030 Hb_009646_010 Hb_009646_010 Hb_001054_090--Hb_009646_010 Hb_003710_020 Hb_003710_020 Hb_001054_090--Hb_003710_020 Hb_001014_190 Hb_001014_190 Hb_001054_090--Hb_001014_190 Hb_080477_080 Hb_080477_080 Hb_001054_090--Hb_080477_080 Hb_000645_200 Hb_000645_200 Hb_018272_060--Hb_000645_200 Hb_018272_060--Hb_000062_660 Hb_018272_060--Hb_005618_090 Hb_009557_030 Hb_009557_030 Hb_018272_060--Hb_009557_030 Hb_172632_050 Hb_172632_050 Hb_018272_060--Hb_172632_050 Hb_005618_090--Hb_002235_060 Hb_001493_090 Hb_001493_090 Hb_005618_090--Hb_001493_090 Hb_002235_410 Hb_002235_410 Hb_005618_090--Hb_002235_410 Hb_005618_090--Hb_001054_090 Hb_000622_330 Hb_000622_330 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_147245_010 Hb_147245_010 Hb_000062_660--Hb_147245_010 Hb_001486_040 Hb_001486_040 Hb_000062_660--Hb_001486_040 Hb_000062_660--Hb_002235_060 Hb_001474_020 Hb_001474_020 Hb_000062_660--Hb_001474_020 Hb_000861_100 Hb_000861_100 Hb_000062_660--Hb_000861_100 Hb_000057_130 Hb_000057_130 Hb_000062_660--Hb_000057_130 Hb_002235_060--Hb_147245_010 Hb_002374_270 Hb_002374_270 Hb_002235_060--Hb_002374_270 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002235_060--Hb_002325_060 Hb_000928_120 Hb_000928_120 Hb_002235_060--Hb_000928_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57245 33.6554 25.9952 57.0124 8.49073 0.589741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9681 12.9627 2.42703 26.1884 20.2668

CAGE analysis