Hb_018272_060

Information

Type -
Description -
Location Contig18272: 41439-42020
Sequence    

Annotation

kegg
ID cit:102628892
description mavicyanin-like
nr
ID XP_006493397.1
description PREDICTED: mavicyanin-like [Citrus sinensis]
swissprot
ID P80728
description Mavicyanin OS=Cucurbita pepo PE=1 SV=1
trembl
ID V4T397
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023318mg PE=4 SV=1
Gene Ontology
ID GO:0005886
description plantacyanin basic blue family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17800: 42125-42241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018272_060 0.0 - - PREDICTED: mavicyanin-like [Citrus sinensis]
2 Hb_047583_010 0.1336787037 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
3 Hb_000645_200 0.1526933917 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
4 Hb_000062_660 0.1558804638 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
5 Hb_005618_090 0.162073624 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
6 Hb_009557_030 0.1659868935 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
7 Hb_172632_050 0.1716014923 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
8 Hb_001728_020 0.1802890045 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
9 Hb_000012_240 0.1810105549 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
10 Hb_000704_030 0.1825831298 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
11 Hb_006816_480 0.1852151018 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_002325_060 0.1855950688 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
13 Hb_004218_120 0.1859572014 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
14 Hb_000120_810 0.1867550192 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
15 Hb_005408_070 0.186903513 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
16 Hb_004079_130 0.1896882058 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
17 Hb_002349_030 0.1902163115 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000711_010 0.1902993625 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_002450_030 0.1903213415 - - ATPP2-A13, putative [Ricinus communis]
20 Hb_172426_030 0.1920511106 - - acetylglucosaminyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_018272_060 Hb_018272_060 Hb_047583_010 Hb_047583_010 Hb_018272_060--Hb_047583_010 Hb_000645_200 Hb_000645_200 Hb_018272_060--Hb_000645_200 Hb_000062_660 Hb_000062_660 Hb_018272_060--Hb_000062_660 Hb_005618_090 Hb_005618_090 Hb_018272_060--Hb_005618_090 Hb_009557_030 Hb_009557_030 Hb_018272_060--Hb_009557_030 Hb_172632_050 Hb_172632_050 Hb_018272_060--Hb_172632_050 Hb_001054_090 Hb_001054_090 Hb_047583_010--Hb_001054_090 Hb_047583_010--Hb_005618_090 Hb_002325_060 Hb_002325_060 Hb_047583_010--Hb_002325_060 Hb_047583_010--Hb_000062_660 Hb_002235_060 Hb_002235_060 Hb_047583_010--Hb_002235_060 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000529_280 Hb_000529_280 Hb_000645_200--Hb_000529_280 Hb_093458_010 Hb_093458_010 Hb_000645_200--Hb_093458_010 Hb_001728_020 Hb_001728_020 Hb_000645_200--Hb_001728_020 Hb_002450_030 Hb_002450_030 Hb_000645_200--Hb_002450_030 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080 Hb_147245_010 Hb_147245_010 Hb_000062_660--Hb_147245_010 Hb_001486_040 Hb_001486_040 Hb_000062_660--Hb_001486_040 Hb_000062_660--Hb_002235_060 Hb_001474_020 Hb_001474_020 Hb_000062_660--Hb_001474_020 Hb_000861_100 Hb_000861_100 Hb_000062_660--Hb_000861_100 Hb_000057_130 Hb_000057_130 Hb_000062_660--Hb_000057_130 Hb_005618_090--Hb_002235_060 Hb_001493_090 Hb_001493_090 Hb_005618_090--Hb_001493_090 Hb_002235_410 Hb_002235_410 Hb_005618_090--Hb_002235_410 Hb_005618_090--Hb_001054_090 Hb_001191_080 Hb_001191_080 Hb_009557_030--Hb_001191_080 Hb_003147_060 Hb_003147_060 Hb_009557_030--Hb_003147_060 Hb_000120_810 Hb_000120_810 Hb_009557_030--Hb_000120_810 Hb_000256_090 Hb_000256_090 Hb_009557_030--Hb_000256_090 Hb_000538_240 Hb_000538_240 Hb_009557_030--Hb_000538_240 Hb_002092_120 Hb_002092_120 Hb_009557_030--Hb_002092_120 Hb_172632_050--Hb_001728_020 Hb_006060_020 Hb_006060_020 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_172632_050--Hb_000529_280 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_000139_470 Hb_000139_470 Hb_172632_050--Hb_000139_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323918 1.23913 0.869974 1.74895 0.253397 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.637537 0.834667 0.264349 0.648177 0.580054

CAGE analysis