Hb_002235_410

Information

Type -
Description -
Location Contig2235: 330303-330611
Sequence    

Annotation

kegg
ID rcu:RCOM_0340250
description zinc finger protein, putative
nr
ID XP_012084713.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067JWG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19857 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_410 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
2 Hb_001491_040 0.1660119727 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_005618_090 0.1666001642 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
4 Hb_000637_020 0.1667519535 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
5 Hb_003670_030 0.1751077141 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
6 Hb_002374_270 0.188812226 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000940_210 0.1891168399 - - cyclophilin [Hevea brasiliensis]
8 Hb_000735_080 0.1919203248 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
9 Hb_004116_070 0.1925485474 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
10 Hb_011457_130 0.1925785566 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
11 Hb_001053_210 0.1934201706 - - -
12 Hb_002119_040 0.1959179971 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_001584_260 0.201496864 - - zinc finger protein, putative [Ricinus communis]
14 Hb_084849_010 0.2017051145 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003964_080 0.203691199 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
16 Hb_002235_060 0.2053888767 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
17 Hb_001135_030 0.2064085161 - - PREDICTED: interaptin-like [Jatropha curcas]
18 Hb_127416_010 0.2072078288 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
19 Hb_013358_020 0.2077568775 - - ccr4-associated factor, putative [Ricinus communis]
20 Hb_056196_060 0.2100908334 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_002235_410 Hb_002235_410 Hb_001491_040 Hb_001491_040 Hb_002235_410--Hb_001491_040 Hb_005618_090 Hb_005618_090 Hb_002235_410--Hb_005618_090 Hb_000637_020 Hb_000637_020 Hb_002235_410--Hb_000637_020 Hb_003670_030 Hb_003670_030 Hb_002235_410--Hb_003670_030 Hb_002374_270 Hb_002374_270 Hb_002235_410--Hb_002374_270 Hb_000940_210 Hb_000940_210 Hb_002235_410--Hb_000940_210 Hb_003647_040 Hb_003647_040 Hb_001491_040--Hb_003647_040 Hb_002119_040 Hb_002119_040 Hb_001491_040--Hb_002119_040 Hb_002000_090 Hb_002000_090 Hb_001491_040--Hb_002000_090 Hb_005694_180 Hb_005694_180 Hb_001491_040--Hb_005694_180 Hb_004586_330 Hb_004586_330 Hb_001491_040--Hb_004586_330 Hb_047583_010 Hb_047583_010 Hb_005618_090--Hb_047583_010 Hb_002235_060 Hb_002235_060 Hb_005618_090--Hb_002235_060 Hb_001493_090 Hb_001493_090 Hb_005618_090--Hb_001493_090 Hb_018272_060 Hb_018272_060 Hb_005618_090--Hb_018272_060 Hb_001054_090 Hb_001054_090 Hb_005618_090--Hb_001054_090 Hb_084849_010 Hb_084849_010 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_013358_020 Hb_013358_020 Hb_000637_020--Hb_013358_020 Hb_000035_050 Hb_000035_050 Hb_000637_020--Hb_000035_050 Hb_000637_020--Hb_002374_270 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_002374_270--Hb_002235_060 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67299 7.89236 11.419 17.2523 1.81278 0.137788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04346 3.55942 2.37177 6.32183 0.8598

CAGE analysis