Hb_001054_090

Information

Type -
Description -
Location Contig1054: 124796-146641
Sequence    

Annotation

kegg
ID rcu:RCOM_0287640
description Potassium channel SKOR, putative (EC:3.1.1.5)
nr
ID XP_002533451.1
description Potassium channel SKOR, putative [Ricinus communis]
swissprot
ID Q9M8S6
description Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1
trembl
ID B9T5D2
description Potassium channel SKOR, putative OS=Ricinus communis GN=RCOM_0287640 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel skor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01830: 125073-136354 , PASA_asmbl_01832: 137368-146637
cDNA
(Sanger)
(ID:Location)		 013_J14.ab1: 137368-146637

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_090 0.0 - - Potassium channel SKOR, putative [Ricinus communis]
2 Hb_004522_030 0.1183717924 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
3 Hb_009646_010 0.1256627562 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
4 Hb_003710_020 0.1268930681 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
5 Hb_047583_010 0.1277314171 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
6 Hb_001014_190 0.1289591516 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_080477_080 0.1303381794 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
8 Hb_029584_100 0.1330153715 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
9 Hb_001247_270 0.1356607655 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
10 Hb_000002_360 0.1365729071 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
11 Hb_000465_260 0.137838143 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
12 Hb_000056_080 0.143157674 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
13 Hb_000928_120 0.1438093494 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
14 Hb_007537_030 0.1451272776 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
15 Hb_147245_010 0.1458838731 - - casein kinase, putative [Ricinus communis]
16 Hb_000139_140 0.1469953233 - - Acyl-CoA synthetase [Ricinus communis]
17 Hb_034507_060 0.1470317015 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
18 Hb_143766_080 0.1492567512 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
19 Hb_002151_100 0.149368942 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
20 Hb_026549_050 0.1494902583 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001054_090 Hb_001054_090 Hb_004522_030 Hb_004522_030 Hb_001054_090--Hb_004522_030 Hb_009646_010 Hb_009646_010 Hb_001054_090--Hb_009646_010 Hb_003710_020 Hb_003710_020 Hb_001054_090--Hb_003710_020 Hb_047583_010 Hb_047583_010 Hb_001054_090--Hb_047583_010 Hb_001014_190 Hb_001014_190 Hb_001054_090--Hb_001014_190 Hb_080477_080 Hb_080477_080 Hb_001054_090--Hb_080477_080 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_010050_020 Hb_010050_020 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_034507_060 Hb_034507_060 Hb_004522_030--Hb_034507_060 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_143766_080 Hb_143766_080 Hb_003710_020--Hb_143766_080 Hb_003710_020--Hb_080477_080 Hb_000062_530 Hb_000062_530 Hb_003710_020--Hb_000062_530 Hb_003710_020--Hb_034507_060 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_003710_020--Hb_004522_030 Hb_018272_060 Hb_018272_060 Hb_047583_010--Hb_018272_060 Hb_005618_090 Hb_005618_090 Hb_047583_010--Hb_005618_090 Hb_002325_060 Hb_002325_060 Hb_047583_010--Hb_002325_060 Hb_000062_660 Hb_000062_660 Hb_047583_010--Hb_000062_660 Hb_002235_060 Hb_002235_060 Hb_047583_010--Hb_002235_060 Hb_029510_100 Hb_029510_100 Hb_001014_190--Hb_029510_100 Hb_005970_010 Hb_005970_010 Hb_001014_190--Hb_005970_010 Hb_004330_080 Hb_004330_080 Hb_001014_190--Hb_004330_080 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_000683_050 Hb_000683_050 Hb_001014_190--Hb_000683_050 Hb_019280_020 Hb_019280_020 Hb_001014_190--Hb_019280_020 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_080477_080--Hb_004522_030 Hb_080477_080--Hb_143766_080 Hb_080477_080--Hb_000062_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48178 11.025 7.45499 21.014 1.60389 0.811602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21489 3.32734 1.94006 11.699 6.40581

CAGE analysis