Hb_000191_050

Information

Type -
Description -
Location Contig191: 57822-58166
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14610g
description hypothetical protein
nr
ID XP_006381644.1
description hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
swissprot
ID Q570U6
description Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
trembl
ID B9MSX7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19029: 57528-59462 , PASA_asmbl_19030: 56444-59462 , PASA_asmbl_19031: 59073-59214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_050 0.0 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
2 Hb_000637_020 0.1291871193 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
3 Hb_084849_010 0.1397240298 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000395_040 0.1441267812 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
5 Hb_002374_270 0.1529584774 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000523_030 0.1566539739 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
7 Hb_000056_080 0.1576078306 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
8 Hb_003849_190 0.1600260811 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
9 Hb_003964_080 0.1649863728 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
10 Hb_000035_050 0.1678005751 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
11 Hb_002078_290 0.1681117249 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
12 Hb_002217_500 0.1710933088 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
13 Hb_002450_030 0.1714057044 - - ATPP2-A13, putative [Ricinus communis]
14 Hb_000203_270 0.1734100119 - - alpha-xylosidase, putative [Ricinus communis]
15 Hb_000740_090 0.1743722518 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004218_120 0.1747726612 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
17 Hb_002325_060 0.1765672613 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
18 Hb_000258_040 0.1772654907 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
19 Hb_001691_040 0.1779664078 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
20 Hb_000424_030 0.1816324615 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000191_050 Hb_000191_050 Hb_000637_020 Hb_000637_020 Hb_000191_050--Hb_000637_020 Hb_084849_010 Hb_084849_010 Hb_000191_050--Hb_084849_010 Hb_000395_040 Hb_000395_040 Hb_000191_050--Hb_000395_040 Hb_002374_270 Hb_002374_270 Hb_000191_050--Hb_002374_270 Hb_000523_030 Hb_000523_030 Hb_000191_050--Hb_000523_030 Hb_000056_080 Hb_000056_080 Hb_000191_050--Hb_000056_080 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_013358_020 Hb_013358_020 Hb_000637_020--Hb_013358_020 Hb_000035_050 Hb_000035_050 Hb_000637_020--Hb_000035_050 Hb_000637_020--Hb_002374_270 Hb_084849_010--Hb_013358_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_084849_010--Hb_000035_050 Hb_002450_030 Hb_002450_030 Hb_084849_010--Hb_002450_030 Hb_000749_070 Hb_000749_070 Hb_084849_010--Hb_000749_070 Hb_001691_040 Hb_001691_040 Hb_000395_040--Hb_001691_040 Hb_005535_080 Hb_005535_080 Hb_000395_040--Hb_005535_080 Hb_000815_240 Hb_000815_240 Hb_000395_040--Hb_000815_240 Hb_005381_020 Hb_005381_020 Hb_000395_040--Hb_005381_020 Hb_000395_040--Hb_000523_030 Hb_000890_030 Hb_000890_030 Hb_000395_040--Hb_000890_030 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110 Hb_003777_130 Hb_003777_130 Hb_000523_030--Hb_003777_130 Hb_000671_030 Hb_000671_030 Hb_000523_030--Hb_000671_030 Hb_000203_270 Hb_000203_270 Hb_000523_030--Hb_000203_270 Hb_000608_280 Hb_000608_280 Hb_000523_030--Hb_000608_280 Hb_000258_420 Hb_000258_420 Hb_000523_030--Hb_000258_420 Hb_002849_070 Hb_002849_070 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000735_140 Hb_000735_140 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.666 112.154 100.918 242.339 5.55187 31.6322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7671 60.4161 26.3825 35.1467 42.1957

CAGE analysis