Hb_000072_190

Information

Type -
Description -
Location Contig72: 332729-335742
Sequence    

Annotation

kegg
ID egr:104422069
description uncharacterized LOC104422069
nr
ID ABR13282.1
description putative S-adenosylmethionine decarboxylase [Prunus dulcis]
swissprot
ID -
description -
trembl
ID A7Y7H5
description Putative S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis PE=2 SV=1
Gene Ontology
ID GO:0004014
description low quality protein: s-adenosylmethionine decarboxylase proenzyme-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55593: 333018-335742 , PASA_asmbl_55594: 333775-335742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_190 0.0 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
2 Hb_013358_020 0.1123405997 - - ccr4-associated factor, putative [Ricinus communis]
3 Hb_084849_010 0.1127932432 - - conserved hypothetical protein [Ricinus communis]
4 Hb_031822_010 0.1224915755 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
5 Hb_000749_070 0.1304563547 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_006018_050 0.1406580039 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
7 Hb_004631_200 0.1487143577 - - conserved hypothetical protein [Ricinus communis]
8 Hb_018790_050 0.1495673843 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
9 Hb_089140_110 0.1524061829 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_004117_170 0.1601672319 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
11 Hb_007253_010 0.1663114691 - - syntaxin, putative [Ricinus communis]
12 Hb_004994_250 0.1684708965 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
13 Hb_000035_050 0.1705899496 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
14 Hb_171900_020 0.1752778057 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
15 Hb_004965_050 0.1769665109 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
16 Hb_000637_020 0.177350702 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
17 Hb_159809_050 0.1792024887 - - AT14A, putative [Ricinus communis]
18 Hb_001246_160 0.1803311515 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
19 Hb_000421_230 0.1848573003 - - retinal degeneration B beta, putative [Ricinus communis]
20 Hb_003633_100 0.1849098602 - - hypoia-responsive family protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000072_190 Hb_000072_190 Hb_013358_020 Hb_013358_020 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_031822_010 Hb_031822_010 Hb_000072_190--Hb_031822_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_006018_050 Hb_006018_050 Hb_000072_190--Hb_006018_050 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200 Hb_013358_020--Hb_000749_070 Hb_000035_050 Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_013358_020--Hb_007253_010 Hb_004117_170 Hb_004117_170 Hb_013358_020--Hb_004117_170 Hb_018790_050 Hb_018790_050 Hb_013358_020--Hb_018790_050 Hb_013358_020--Hb_084849_010 Hb_000637_020 Hb_000637_020 Hb_084849_010--Hb_000637_020 Hb_084849_010--Hb_000035_050 Hb_002450_030 Hb_002450_030 Hb_084849_010--Hb_002450_030 Hb_084849_010--Hb_000749_070 Hb_003147_070 Hb_003147_070 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_031822_010--Hb_018790_050 Hb_031822_010--Hb_013358_020 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_159809_050 Hb_159809_050 Hb_000749_070--Hb_159809_050 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050 Hb_001579_070 Hb_001579_070 Hb_006018_050--Hb_001579_070 Hb_006018_050--Hb_031822_010 Hb_089140_110 Hb_089140_110 Hb_006018_050--Hb_089140_110 Hb_000162_130 Hb_000162_130 Hb_006018_050--Hb_000162_130 Hb_003633_100 Hb_003633_100 Hb_006018_050--Hb_003633_100 Hb_004631_200--Hb_000749_070 Hb_004631_200--Hb_013358_020 Hb_004631_200--Hb_004994_250 Hb_004631_200--Hb_000637_020 Hb_000445_100 Hb_000445_100 Hb_004631_200--Hb_000445_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.7318 933.402 866.069 808.185 55.6153 72.5843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.207 471.178 202.972 92.5878 76.072

CAGE analysis