Hb_004631_200

Information

Type -
Description -
Location Contig4631: 172123-174171
Sequence    

Annotation

kegg
ID rcu:RCOM_0767320
description hypothetical protein
nr
ID XP_002531664.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I8B9
description Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1
trembl
ID B9T095
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0767320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000749_070 0.1365475863 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
3 Hb_013358_020 0.1371620148 - - ccr4-associated factor, putative [Ricinus communis]
4 Hb_000072_190 0.1487143577 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
5 Hb_004994_250 0.1530353768 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
6 Hb_000637_020 0.1551199229 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
7 Hb_000445_100 0.1578757776 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
8 Hb_008959_040 0.1633164584 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_001769_110 0.1639140755 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
10 Hb_084849_010 0.1651976196 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001519_060 0.1677918391 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
12 Hb_007253_010 0.1730992702 - - syntaxin, putative [Ricinus communis]
13 Hb_001246_160 0.1753663299 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
14 Hb_159809_050 0.1761107265 - - AT14A, putative [Ricinus communis]
15 Hb_041895_040 0.1780411404 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_050 0.1806650471 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
17 Hb_006018_050 0.1811126512 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
18 Hb_006775_070 0.1819739997 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000020_100 0.1822937846 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
20 Hb_015026_040 0.1841349796 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004631_200 Hb_004631_200 Hb_000749_070 Hb_000749_070 Hb_004631_200--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_004631_200--Hb_013358_020 Hb_000072_190 Hb_000072_190 Hb_004631_200--Hb_000072_190 Hb_004994_250 Hb_004994_250 Hb_004631_200--Hb_004994_250 Hb_000637_020 Hb_000637_020 Hb_004631_200--Hb_000637_020 Hb_000445_100 Hb_000445_100 Hb_004631_200--Hb_000445_100 Hb_000749_070--Hb_013358_020 Hb_007253_010 Hb_007253_010 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_159809_050 Hb_159809_050 Hb_000749_070--Hb_159809_050 Hb_004117_170 Hb_004117_170 Hb_000749_070--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_000749_070--Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_007253_010 Hb_013358_020--Hb_004117_170 Hb_018790_050 Hb_018790_050 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_000072_190--Hb_013358_020 Hb_000072_190--Hb_084849_010 Hb_031822_010 Hb_031822_010 Hb_000072_190--Hb_031822_010 Hb_000072_190--Hb_000749_070 Hb_006018_050 Hb_006018_050 Hb_000072_190--Hb_006018_050 Hb_004994_250--Hb_031822_010 Hb_004994_250--Hb_000072_190 Hb_001769_110 Hb_001769_110 Hb_004994_250--Hb_001769_110 Hb_000003_240 Hb_000003_240 Hb_004994_250--Hb_000003_240 Hb_004994_250--Hb_013358_020 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_000637_020--Hb_013358_020 Hb_000637_020--Hb_000035_050 Hb_002374_270 Hb_002374_270 Hb_000637_020--Hb_002374_270 Hb_015026_040 Hb_015026_040 Hb_000445_100--Hb_015026_040 Hb_000445_100--Hb_159809_050 Hb_000421_230 Hb_000421_230 Hb_000445_100--Hb_000421_230 Hb_000445_100--Hb_000749_070 Hb_090782_010 Hb_090782_010 Hb_000445_100--Hb_090782_010 Hb_003581_280 Hb_003581_280 Hb_000445_100--Hb_003581_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.365473 1.67812 2.34129 1.99126 0.348785 0.114868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219712 0.605071 0.196825 0.116897 0.182805

CAGE analysis