Hb_000003_240

Information

Type -
Description -
Location Contig3: 136523-139441
Sequence    

Annotation

kegg
ID rcu:RCOM_1454020
description hypothetical protein
nr
ID XP_002513121.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DJC8
description Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1
trembl
ID B9RGG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454020 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transmembrane protein 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31389: 135565-135830 , PASA_asmbl_31390: 137942-138376 , PASA_asmbl_31391: 138401-138728 , PASA_asmbl_31392: 136559-139600 , PASA_asmbl_31393: 136713-139600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001579_070 0.1095502851 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
3 Hb_001242_180 0.1295283861 - - choline/ethanolamine kinase, putative [Ricinus communis]
4 Hb_000680_180 0.1458719698 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
5 Hb_002876_070 0.1472988332 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
6 Hb_001519_060 0.1475237435 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
7 Hb_011930_120 0.1479311667 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
8 Hb_000162_130 0.1499110335 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002151_130 0.1518035485 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
10 Hb_002217_190 0.1537605512 - - invertase [Hevea brasiliensis]
11 Hb_004586_130 0.1577775357 - - conserved hypothetical protein [Ricinus communis]
12 Hb_018790_050 0.1584124514 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
13 Hb_005348_090 0.1592884553 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
14 Hb_031822_010 0.1603492848 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
15 Hb_001246_160 0.1606317163 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
16 Hb_155946_030 0.1608086045 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
17 Hb_124677_020 0.1666891328 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_000959_020 0.1680975892 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_002007_070 0.1692042386 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
20 Hb_004994_250 0.1696868194 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_240 Hb_000003_240 Hb_001579_070 Hb_001579_070 Hb_000003_240--Hb_001579_070 Hb_001242_180 Hb_001242_180 Hb_000003_240--Hb_001242_180 Hb_000680_180 Hb_000680_180 Hb_000003_240--Hb_000680_180 Hb_002876_070 Hb_002876_070 Hb_000003_240--Hb_002876_070 Hb_001519_060 Hb_001519_060 Hb_000003_240--Hb_001519_060 Hb_011930_120 Hb_011930_120 Hb_000003_240--Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001579_070--Hb_001519_060 Hb_001579_070--Hb_000680_180 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_001242_180--Hb_001579_070 Hb_005348_090 Hb_005348_090 Hb_001242_180--Hb_005348_090 Hb_001878_020 Hb_001878_020 Hb_001242_180--Hb_001878_020 Hb_000454_080 Hb_000454_080 Hb_001242_180--Hb_000454_080 Hb_002217_190 Hb_002217_190 Hb_001242_180--Hb_002217_190 Hb_000680_180--Hb_011930_120 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_002876_070--Hb_004586_130 Hb_003207_100 Hb_003207_100 Hb_002876_070--Hb_003207_100 Hb_000272_110 Hb_000272_110 Hb_002876_070--Hb_000272_110 Hb_002876_070--Hb_011930_120 Hb_008020_020 Hb_008020_020 Hb_002876_070--Hb_008020_020 Hb_001246_160 Hb_001246_160 Hb_002876_070--Hb_001246_160 Hb_007224_010 Hb_007224_010 Hb_001519_060--Hb_007224_010 Hb_001627_010 Hb_001627_010 Hb_001519_060--Hb_001627_010 Hb_002965_080 Hb_002965_080 Hb_001519_060--Hb_002965_080 Hb_001396_120 Hb_001396_120 Hb_001519_060--Hb_001396_120 Hb_001519_060--Hb_002217_190 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_011930_120--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_011930_120--Hb_000805_040 Hb_002498_250 Hb_002498_250 Hb_011930_120--Hb_002498_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87477 52.267 53.7085 23.7943 0.892534 2.3312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.00108 6.5647 7.70929 2.66254 5.47276

CAGE analysis