Hb_005348_090

Information

Type transcription factor
Description TF Family: Tify
Location Contig5348: 80175-82182
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14160g
description hypothetical protein
nr
ID ADI39634.1
description plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
swissprot
ID Q9S7M2
description Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1
trembl
ID D8V3L7
description Plastid jasmonates ZIM-domain protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47511: 80051-82211 , PASA_asmbl_47512: 80437-80800
cDNA
(Sanger)
(ID:Location)		 011_N11.ab1: 80051-80915 , 020_M24.ab1: 80051-80915 , 022_H20.ab1: 80051-80915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_090 0.0 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
2 Hb_001242_180 0.1407970255 - - choline/ethanolamine kinase, putative [Ricinus communis]
3 Hb_002151_130 0.145913424 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
4 Hb_000003_240 0.1592884553 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000260_300 0.1720166797 - - calcium binding protein/cast, putative [Ricinus communis]
6 Hb_124677_020 0.172451528 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_004235_060 0.1921910739 - - phosphate transporter [Manihot esculenta]
8 Hb_155946_030 0.1967657264 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
9 Hb_031108_010 0.1975300419 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
10 Hb_002876_070 0.1994151194 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
11 Hb_001878_020 0.1997273894 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
12 Hb_001579_070 0.2047982141 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
13 Hb_001636_060 0.2058969001 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
14 Hb_000336_060 0.2087470849 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
15 Hb_000272_110 0.2102991357 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
16 Hb_002217_190 0.2126160101 - - invertase [Hevea brasiliensis]
17 Hb_004586_130 0.2128504096 - - conserved hypothetical protein [Ricinus communis]
18 Hb_027445_040 0.2140567006 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
19 Hb_004970_070 0.21696011 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
20 Hb_031822_010 0.2187870043 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]

Gene co-expression network

sample Hb_005348_090 Hb_005348_090 Hb_001242_180 Hb_001242_180 Hb_005348_090--Hb_001242_180 Hb_002151_130 Hb_002151_130 Hb_005348_090--Hb_002151_130 Hb_000003_240 Hb_000003_240 Hb_005348_090--Hb_000003_240 Hb_000260_300 Hb_000260_300 Hb_005348_090--Hb_000260_300 Hb_124677_020 Hb_124677_020 Hb_005348_090--Hb_124677_020 Hb_004235_060 Hb_004235_060 Hb_005348_090--Hb_004235_060 Hb_001242_180--Hb_000003_240 Hb_001579_070 Hb_001579_070 Hb_001242_180--Hb_001579_070 Hb_001878_020 Hb_001878_020 Hb_001242_180--Hb_001878_020 Hb_000454_080 Hb_000454_080 Hb_001242_180--Hb_000454_080 Hb_002217_190 Hb_002217_190 Hb_001242_180--Hb_002217_190 Hb_004586_130 Hb_004586_130 Hb_002151_130--Hb_004586_130 Hb_002151_130--Hb_124677_020 Hb_000984_290 Hb_000984_290 Hb_002151_130--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_002151_130--Hb_061908_030 Hb_010126_030 Hb_010126_030 Hb_002151_130--Hb_010126_030 Hb_002876_070 Hb_002876_070 Hb_002151_130--Hb_002876_070 Hb_000003_240--Hb_001579_070 Hb_000680_180 Hb_000680_180 Hb_000003_240--Hb_000680_180 Hb_000003_240--Hb_002876_070 Hb_001519_060 Hb_001519_060 Hb_000003_240--Hb_001519_060 Hb_011930_120 Hb_011930_120 Hb_000003_240--Hb_011930_120 Hb_000260_300--Hb_124677_020 Hb_006043_020 Hb_006043_020 Hb_000260_300--Hb_006043_020 Hb_155946_030 Hb_155946_030 Hb_000260_300--Hb_155946_030 Hb_005976_040 Hb_005976_040 Hb_000260_300--Hb_005976_040 Hb_018563_020 Hb_018563_020 Hb_000260_300--Hb_018563_020 Hb_000336_060 Hb_000336_060 Hb_000260_300--Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_124677_020--Hb_155946_030 Hb_006120_170 Hb_006120_170 Hb_004235_060--Hb_006120_170 Hb_000252_080 Hb_000252_080 Hb_004235_060--Hb_000252_080 Hb_000347_020 Hb_000347_020 Hb_004235_060--Hb_000347_020 Hb_009083_010 Hb_009083_010 Hb_004235_060--Hb_009083_010 Hb_006615_160 Hb_006615_160 Hb_004235_060--Hb_006615_160 Hb_031108_010 Hb_031108_010 Hb_004235_060--Hb_031108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.58019 343.695 395.188 121.685 0.667331 1.52452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.2165 39.5525 31.6557 63.137 11.6043

CAGE analysis