Hb_006120_170

Information

Type transcription factor
Description TF Family: MYB
Location Contig6120: 98119-99865
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15970g
description POPTRDRAFT_566874; hypothetical protein
nr
ID XP_011027944.1
description PREDICTED: transcription factor MYB108-like [Populus euphratica]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID B9HX62
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15970g PE=4 SV=2
Gene Ontology
ID GO:0005488
description transcription factor myb108-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51053: 98223-99681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_170 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
2 Hb_004235_060 0.1341164116 - - phosphate transporter [Manihot esculenta]
3 Hb_000252_080 0.1467138758 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
4 Hb_009775_040 0.1823677328 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
5 Hb_000914_130 0.1925476564 - - copper-transporting atpase p-type, putative [Ricinus communis]
6 Hb_000752_020 0.2113100341 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
7 Hb_001374_040 0.2165519468 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
8 Hb_000320_020 0.2173924447 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
9 Hb_000031_160 0.2208506728 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
10 Hb_006120_120 0.2249263688 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031108_010 0.2259113038 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
12 Hb_005814_010 0.2266179709 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000130_080 0.228540287 - - unnamed protein product [Vitis vinifera]
14 Hb_158111_010 0.2306532147 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
15 Hb_002615_010 0.2310817289 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
16 Hb_004007_120 0.2315321727 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
17 Hb_002477_100 0.2325163565 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
18 Hb_000027_130 0.2328932586 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
19 Hb_009083_010 0.2336957024 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
20 Hb_001318_110 0.2338854738 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_170 Hb_006120_170 Hb_004235_060 Hb_004235_060 Hb_006120_170--Hb_004235_060 Hb_000252_080 Hb_000252_080 Hb_006120_170--Hb_000252_080 Hb_009775_040 Hb_009775_040 Hb_006120_170--Hb_009775_040 Hb_000914_130 Hb_000914_130 Hb_006120_170--Hb_000914_130 Hb_000752_020 Hb_000752_020 Hb_006120_170--Hb_000752_020 Hb_001374_040 Hb_001374_040 Hb_006120_170--Hb_001374_040 Hb_004235_060--Hb_000252_080 Hb_000347_020 Hb_000347_020 Hb_004235_060--Hb_000347_020 Hb_009083_010 Hb_009083_010 Hb_004235_060--Hb_009083_010 Hb_006615_160 Hb_006615_160 Hb_004235_060--Hb_006615_160 Hb_031108_010 Hb_031108_010 Hb_004235_060--Hb_031108_010 Hb_000252_080--Hb_000752_020 Hb_000252_080--Hb_009083_010 Hb_004459_110 Hb_004459_110 Hb_000252_080--Hb_004459_110 Hb_006970_150 Hb_006970_150 Hb_000252_080--Hb_006970_150 Hb_006503_010 Hb_006503_010 Hb_009775_040--Hb_006503_010 Hb_143629_030 Hb_143629_030 Hb_009775_040--Hb_143629_030 Hb_000216_010 Hb_000216_010 Hb_009775_040--Hb_000216_010 Hb_000359_320 Hb_000359_320 Hb_009775_040--Hb_000359_320 Hb_009775_040--Hb_004235_060 Hb_000130_080 Hb_000130_080 Hb_000914_130--Hb_000130_080 Hb_004007_120 Hb_004007_120 Hb_000914_130--Hb_004007_120 Hb_008215_010 Hb_008215_010 Hb_000914_130--Hb_008215_010 Hb_005649_010 Hb_005649_010 Hb_000914_130--Hb_005649_010 Hb_000227_370 Hb_000227_370 Hb_000914_130--Hb_000227_370 Hb_000120_070 Hb_000120_070 Hb_000914_130--Hb_000120_070 Hb_000027_130 Hb_000027_130 Hb_000752_020--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_000752_020--Hb_000771_070 Hb_000473_080 Hb_000473_080 Hb_000752_020--Hb_000473_080 Hb_003529_230 Hb_003529_230 Hb_000752_020--Hb_003529_230 Hb_005814_010 Hb_005814_010 Hb_000752_020--Hb_005814_010 Hb_000575_090 Hb_000575_090 Hb_001374_040--Hb_000575_090 Hb_001374_040--Hb_006970_150 Hb_031862_020 Hb_031862_020 Hb_001374_040--Hb_031862_020 Hb_000836_560 Hb_000836_560 Hb_001374_040--Hb_000836_560 Hb_000237_070 Hb_000237_070 Hb_001374_040--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_001374_040--Hb_000417_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0671262 8.51594 6.59097 1.52279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0877938 1.72641 0.256029 3.79471 0.284742

CAGE analysis