Hb_000130_080

Information

Type -
Description -
Location Contig130: 38516-42633
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11240g
description POPTRDRAFT_568819; hypothetical protein
nr
ID CBI18437.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID F6GYL7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g00900 PE=3 SV=1
Gene Ontology
ID GO:0000166
description probable mitochondrial chaperone bcs1-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08878: 41015-41232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_080 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000914_130 0.1196528164 - - copper-transporting atpase p-type, putative [Ricinus communis]
3 Hb_004007_120 0.1526213093 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
4 Hb_006925_060 0.1609182901 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
5 Hb_005186_090 0.1650440162 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006970_150 0.1653213864 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
7 Hb_002343_020 0.1654507184 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
8 Hb_005649_010 0.1663385447 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
9 Hb_008215_010 0.1663488178 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000008_080 0.1666374597 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000046_590 0.1691254141 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_003680_250 0.1699017027 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_001842_060 0.1715874728 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
14 Hb_000723_120 0.1719701914 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
15 Hb_001636_010 0.1736133405 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
16 Hb_010578_050 0.1748945071 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
17 Hb_008948_080 0.175407246 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
18 Hb_025236_020 0.1773429852 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
19 Hb_187991_010 0.1773585298 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_029622_020 0.1774074831 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000130_080 Hb_000130_080 Hb_000914_130 Hb_000914_130 Hb_000130_080--Hb_000914_130 Hb_004007_120 Hb_004007_120 Hb_000130_080--Hb_004007_120 Hb_006925_060 Hb_006925_060 Hb_000130_080--Hb_006925_060 Hb_005186_090 Hb_005186_090 Hb_000130_080--Hb_005186_090 Hb_006970_150 Hb_006970_150 Hb_000130_080--Hb_006970_150 Hb_002343_020 Hb_002343_020 Hb_000130_080--Hb_002343_020 Hb_000914_130--Hb_004007_120 Hb_008215_010 Hb_008215_010 Hb_000914_130--Hb_008215_010 Hb_005649_010 Hb_005649_010 Hb_000914_130--Hb_005649_010 Hb_000227_370 Hb_000227_370 Hb_000914_130--Hb_000227_370 Hb_000120_070 Hb_000120_070 Hb_000914_130--Hb_000120_070 Hb_000977_090 Hb_000977_090 Hb_004007_120--Hb_000977_090 Hb_004007_120--Hb_000120_070 Hb_004218_160 Hb_004218_160 Hb_004007_120--Hb_004218_160 Hb_003556_070 Hb_003556_070 Hb_004007_120--Hb_003556_070 Hb_004007_120--Hb_005649_010 Hb_000001_010 Hb_000001_010 Hb_006925_060--Hb_000001_010 Hb_063523_010 Hb_063523_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_005628_050 Hb_005628_050 Hb_006925_060--Hb_005628_050 Hb_003751_050 Hb_003751_050 Hb_006925_060--Hb_003751_050 Hb_187991_010 Hb_187991_010 Hb_006925_060--Hb_187991_010 Hb_000625_060 Hb_000625_060 Hb_005186_090--Hb_000625_060 Hb_010578_050 Hb_010578_050 Hb_005186_090--Hb_010578_050 Hb_000030_260 Hb_000030_260 Hb_005186_090--Hb_000030_260 Hb_004286_030 Hb_004286_030 Hb_005186_090--Hb_004286_030 Hb_001842_060 Hb_001842_060 Hb_005186_090--Hb_001842_060 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_006970_150--Hb_000120_070 Hb_000265_020 Hb_000265_020 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00966109 0.7539 0.526524 0.192139 0.0307325 0.0209772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0417999 0.026561 0.680563 0.118462

CAGE analysis