Hb_005186_090

Information

Type -
Description -
Location Contig5186: 74281-78013
Sequence    

Annotation

kegg
ID rcu:RCOM_1371710
description serine-threonine protein kinase, plant-type, putative (EC:3.1.3.16)
nr
ID XP_002531443.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGS2
description Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=2 SV=1
trembl
ID B9SZM4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1371710 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46615: 77820-77975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005186_090 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000625_060 0.1059466714 - - Protein P21, putative [Ricinus communis]
3 Hb_010578_050 0.112636113 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
4 Hb_000030_260 0.1645966428 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
5 Hb_000130_080 0.1650440162 - - unnamed protein product [Vitis vinifera]
6 Hb_004286_030 0.1675345737 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
7 Hb_001842_060 0.1733746874 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
8 Hb_002783_320 0.1775195825 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
9 Hb_001514_210 0.1821801974 - - hypothetical protein VITISV_012133 [Vitis vinifera]
10 Hb_001252_040 0.1826600519 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
11 Hb_002030_170 0.1830066113 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
12 Hb_001579_170 0.1832658575 - - unnamed protein product [Vitis vinifera]
13 Hb_002662_090 0.1881659706 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
14 Hb_000723_120 0.1883582392 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
15 Hb_004657_040 0.1886810118 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
16 Hb_162286_030 0.1887946335 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
17 Hb_000836_390 0.1896416742 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
18 Hb_004195_170 0.1904236608 - - ATP binding protein, putative [Ricinus communis]
19 Hb_008215_010 0.1926727674 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001454_410 0.1967113188 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]

Gene co-expression network

sample Hb_005186_090 Hb_005186_090 Hb_000625_060 Hb_000625_060 Hb_005186_090--Hb_000625_060 Hb_010578_050 Hb_010578_050 Hb_005186_090--Hb_010578_050 Hb_000030_260 Hb_000030_260 Hb_005186_090--Hb_000030_260 Hb_000130_080 Hb_000130_080 Hb_005186_090--Hb_000130_080 Hb_004286_030 Hb_004286_030 Hb_005186_090--Hb_004286_030 Hb_001842_060 Hb_001842_060 Hb_005186_090--Hb_001842_060 Hb_000625_060--Hb_010578_050 Hb_004657_040 Hb_004657_040 Hb_000625_060--Hb_004657_040 Hb_001514_210 Hb_001514_210 Hb_000625_060--Hb_001514_210 Hb_000625_060--Hb_000030_260 Hb_162286_030 Hb_162286_030 Hb_000625_060--Hb_162286_030 Hb_002783_320 Hb_002783_320 Hb_010578_050--Hb_002783_320 Hb_010578_050--Hb_000030_260 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_011791_010 Hb_011791_010 Hb_000030_260--Hb_011791_010 Hb_000030_260--Hb_002783_320 Hb_000223_050 Hb_000223_050 Hb_000030_260--Hb_000223_050 Hb_001838_010 Hb_001838_010 Hb_000030_260--Hb_001838_010 Hb_000723_120 Hb_000723_120 Hb_000030_260--Hb_000723_120 Hb_000914_130 Hb_000914_130 Hb_000130_080--Hb_000914_130 Hb_004007_120 Hb_004007_120 Hb_000130_080--Hb_004007_120 Hb_006925_060 Hb_006925_060 Hb_000130_080--Hb_006925_060 Hb_006970_150 Hb_006970_150 Hb_000130_080--Hb_006970_150 Hb_002343_020 Hb_002343_020 Hb_000130_080--Hb_002343_020 Hb_002662_090 Hb_002662_090 Hb_004286_030--Hb_002662_090 Hb_000051_030 Hb_000051_030 Hb_004286_030--Hb_000051_030 Hb_004286_030--Hb_010578_050 Hb_004286_030--Hb_001842_060 Hb_004286_030--Hb_000625_060 Hb_002030_170 Hb_002030_170 Hb_001842_060--Hb_002030_170 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_001842_060--Hb_002662_090 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_004631_080 Hb_004631_080 Hb_001842_060--Hb_004631_080 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00857801 0.709185 0.258105 0.143762 0.0670297 0.0319017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0153269 0.0291617 0.785683 0.0325095

CAGE analysis