Hb_010578_050

Information

Type transcription factor
Description TF Family: bHLH
Location Contig10578: 47592-53606
Sequence    

Annotation

kegg
ID rcu:RCOM_0484610
description hypothetical protein
nr
ID XP_002531293.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22768
description Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2
trembl
ID B9SZ73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0484610 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor une12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01903: 47796-48050 , PASA_asmbl_01904: 48087-53557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_050 0.0 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
2 Hb_005186_090 0.112636113 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002783_320 0.1153625844 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
4 Hb_000625_060 0.119864152 - - Protein P21, putative [Ricinus communis]
5 Hb_000030_260 0.1290215268 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
6 Hb_000836_390 0.1360517693 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
7 Hb_000120_070 0.1396492663 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
8 Hb_008406_020 0.141806238 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
9 Hb_000723_120 0.1458610002 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
10 Hb_004218_160 0.1515662865 - - NBS-LRR type disease resistance protein [Medicago truncatula]
11 Hb_003556_070 0.1517129926 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_004195_170 0.1518357708 - - ATP binding protein, putative [Ricinus communis]
13 Hb_068332_010 0.1527058993 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_008215_010 0.1534954357 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000579_180 0.1564681549 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
16 Hb_004286_030 0.156883299 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
17 Hb_008948_080 0.1614399762 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
18 Hb_000676_030 0.1634524881 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
19 Hb_007765_140 0.1641330991 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
20 Hb_005000_200 0.1646757093 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]

Gene co-expression network

sample Hb_010578_050 Hb_010578_050 Hb_005186_090 Hb_005186_090 Hb_010578_050--Hb_005186_090 Hb_002783_320 Hb_002783_320 Hb_010578_050--Hb_002783_320 Hb_000625_060 Hb_000625_060 Hb_010578_050--Hb_000625_060 Hb_000030_260 Hb_000030_260 Hb_010578_050--Hb_000030_260 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_005186_090--Hb_000625_060 Hb_005186_090--Hb_000030_260 Hb_000130_080 Hb_000130_080 Hb_005186_090--Hb_000130_080 Hb_004286_030 Hb_004286_030 Hb_005186_090--Hb_004286_030 Hb_001842_060 Hb_001842_060 Hb_005186_090--Hb_001842_060 Hb_002783_320--Hb_000030_260 Hb_000676_030 Hb_000676_030 Hb_002783_320--Hb_000676_030 Hb_017866_020 Hb_017866_020 Hb_002783_320--Hb_017866_020 Hb_011970_040 Hb_011970_040 Hb_002783_320--Hb_011970_040 Hb_004195_170 Hb_004195_170 Hb_002783_320--Hb_004195_170 Hb_004657_040 Hb_004657_040 Hb_000625_060--Hb_004657_040 Hb_001514_210 Hb_001514_210 Hb_000625_060--Hb_001514_210 Hb_000625_060--Hb_000030_260 Hb_162286_030 Hb_162286_030 Hb_000625_060--Hb_162286_030 Hb_011791_010 Hb_011791_010 Hb_000030_260--Hb_011791_010 Hb_000223_050 Hb_000223_050 Hb_000030_260--Hb_000223_050 Hb_001838_010 Hb_001838_010 Hb_000030_260--Hb_001838_010 Hb_000723_120 Hb_000723_120 Hb_000030_260--Hb_000723_120 Hb_007765_140 Hb_007765_140 Hb_000836_390--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000836_390--Hb_008215_010 Hb_000836_390--Hb_000120_070 Hb_075449_040 Hb_075449_040 Hb_000836_390--Hb_075449_040 Hb_003376_200 Hb_003376_200 Hb_000836_390--Hb_003376_200 Hb_000075_110 Hb_000075_110 Hb_000836_390--Hb_000075_110 Hb_000120_070--Hb_007765_140 Hb_000120_070--Hb_008215_010 Hb_000120_070--Hb_000075_110 Hb_003556_070 Hb_003556_070 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.36136 17.4076 4.89744 4.46569 0.603654 0.771493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0693593 0.0545735 0.344757 13.9781 0.96049

CAGE analysis