Hb_011970_040

Information

Type -
Description -
Location Contig11970: 40187-45709
Sequence    

Annotation

kegg
ID rcu:RCOM_0979280
description hypothetical protein
nr
ID XP_002521290.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5M1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0979280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05924: 40453-44389 , PASA_asmbl_05926: 44563-44810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011970_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003031_030 0.1276935333 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
3 Hb_000670_110 0.136253668 - - l-asparaginase, putative [Ricinus communis]
4 Hb_001514_210 0.139170345 - - hypothetical protein VITISV_012133 [Vitis vinifera]
5 Hb_002783_320 0.1431345322 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
6 Hb_001863_460 0.1453569723 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
7 Hb_001248_030 0.1463426255 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002805_150 0.14726084 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_003119_070 0.1480651175 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_002917_030 0.1483566901 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
11 Hb_000043_080 0.1485453823 - - lipid binding protein, putative [Ricinus communis]
12 Hb_012395_070 0.1506140782 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
13 Hb_000657_030 0.1532586 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_000616_050 0.1574096624 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
15 Hb_007416_150 0.1576550719 - - sarcosine oxidase, putative [Ricinus communis]
16 Hb_012753_200 0.1582690943 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
17 Hb_001408_050 0.158891453 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001489_030 0.1589987958 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
19 Hb_000030_260 0.1592014684 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
20 Hb_000625_060 0.1617296057 - - Protein P21, putative [Ricinus communis]

Gene co-expression network

sample Hb_011970_040 Hb_011970_040 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_000670_110 Hb_000670_110 Hb_011970_040--Hb_000670_110 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_002783_320 Hb_002783_320 Hb_011970_040--Hb_002783_320 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_001248_030 Hb_001248_030 Hb_011970_040--Hb_001248_030 Hb_001838_050 Hb_001838_050 Hb_003031_030--Hb_001838_050 Hb_004574_010 Hb_004574_010 Hb_003031_030--Hb_004574_010 Hb_000616_050 Hb_000616_050 Hb_003031_030--Hb_000616_050 Hb_002805_150 Hb_002805_150 Hb_003031_030--Hb_002805_150 Hb_012395_070 Hb_012395_070 Hb_003031_030--Hb_012395_070 Hb_012753_200 Hb_012753_200 Hb_003031_030--Hb_012753_200 Hb_000106_070 Hb_000106_070 Hb_000670_110--Hb_000106_070 Hb_003052_200 Hb_003052_200 Hb_000670_110--Hb_003052_200 Hb_004195_110 Hb_004195_110 Hb_000670_110--Hb_004195_110 Hb_011618_040 Hb_011618_040 Hb_000670_110--Hb_011618_040 Hb_000670_110--Hb_001248_030 Hb_001514_210--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_001514_210--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_001514_210--Hb_000579_180 Hb_001514_210--Hb_002805_150 Hb_002686_390 Hb_002686_390 Hb_001514_210--Hb_002686_390 Hb_001514_210--Hb_003031_030 Hb_010578_050 Hb_010578_050 Hb_002783_320--Hb_010578_050 Hb_000030_260 Hb_000030_260 Hb_002783_320--Hb_000030_260 Hb_000676_030 Hb_000676_030 Hb_002783_320--Hb_000676_030 Hb_017866_020 Hb_017866_020 Hb_002783_320--Hb_017866_020 Hb_004195_170 Hb_004195_170 Hb_002783_320--Hb_004195_170 Hb_004136_050 Hb_004136_050 Hb_001863_460--Hb_004136_050 Hb_186298_010 Hb_186298_010 Hb_001863_460--Hb_186298_010 Hb_126077_020 Hb_126077_020 Hb_001863_460--Hb_126077_020 Hb_002917_020 Hb_002917_020 Hb_001863_460--Hb_002917_020 Hb_002843_010 Hb_002843_010 Hb_001863_460--Hb_002843_010 Hb_004931_060 Hb_004931_060 Hb_001863_460--Hb_004931_060 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_002304_140 Hb_002304_140 Hb_001248_030--Hb_002304_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76786 75.8615 9.25275 14.2981 0.736884 1.00736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51763 0.572102 0.700709 96.1937 3.53697

CAGE analysis