Hb_003052_200

Information

Type -
Description -
Location Contig3052: 187790-188935
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14360g
description POPTRDRAFT_566710; hypothetical protein
nr
ID XP_002315977.2
description hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HWQ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14360g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32198: 187629-188211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_200 0.0 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
2 Hb_000106_070 0.115682561 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
3 Hb_000670_110 0.1371684619 - - l-asparaginase, putative [Ricinus communis]
4 Hb_070277_010 0.1727269479 - - PREDICTED: purine permease 3-like [Jatropha curcas]
5 Hb_001248_030 0.1782982748 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_011970_040 0.1825384071 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002304_140 0.1970744089 - - ring finger protein, putative [Ricinus communis]
8 Hb_004195_110 0.1997462172 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
9 Hb_011618_040 0.2027551107 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007416_150 0.2051478871 - - sarcosine oxidase, putative [Ricinus communis]
11 Hb_003504_040 0.2079583032 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
12 Hb_001951_030 0.2125695088 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
13 Hb_050399_010 0.2144587247 - - PREDICTED: protein LYK5-like [Jatropha curcas]
14 Hb_002760_030 0.2163239788 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
15 Hb_003119_070 0.2239493602 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
16 Hb_006198_150 0.2252509149 - - -
17 Hb_001951_090 0.2272637931 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_001640_020 0.2275674649 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
19 Hb_000000_240 0.2296717741 - - PREDICTED: protein LYK5-like [Jatropha curcas]
20 Hb_001408_050 0.2322922153 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003052_200 Hb_003052_200 Hb_000106_070 Hb_000106_070 Hb_003052_200--Hb_000106_070 Hb_000670_110 Hb_000670_110 Hb_003052_200--Hb_000670_110 Hb_070277_010 Hb_070277_010 Hb_003052_200--Hb_070277_010 Hb_001248_030 Hb_001248_030 Hb_003052_200--Hb_001248_030 Hb_011970_040 Hb_011970_040 Hb_003052_200--Hb_011970_040 Hb_002304_140 Hb_002304_140 Hb_003052_200--Hb_002304_140 Hb_000106_070--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_000106_070--Hb_011618_040 Hb_003299_010 Hb_003299_010 Hb_000106_070--Hb_003299_010 Hb_000106_070--Hb_011970_040 Hb_003119_070 Hb_003119_070 Hb_000106_070--Hb_003119_070 Hb_000670_110--Hb_011970_040 Hb_004195_110 Hb_004195_110 Hb_000670_110--Hb_004195_110 Hb_000670_110--Hb_011618_040 Hb_000670_110--Hb_001248_030 Hb_070277_010--Hb_004195_110 Hb_070277_010--Hb_000106_070 Hb_050399_010 Hb_050399_010 Hb_070277_010--Hb_050399_010 Hb_070277_010--Hb_000670_110 Hb_070277_010--Hb_002304_140 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_001248_030--Hb_002304_140 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_002783_320 Hb_002783_320 Hb_011970_040--Hb_002783_320 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_011970_040--Hb_001248_030 Hb_002304_140--Hb_007416_150 Hb_002304_140--Hb_004195_110 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_000098_310 Hb_000098_310 Hb_002304_140--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38791 21.149 0.587297 3.44766 0.202008 0.509143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92956 1.82133 0.250365 28.8313 0.208852

CAGE analysis