Hb_050399_010

Information

Type -
Description -
Location Contig50399: 203-712
Sequence    

Annotation

kegg
ID rcu:RCOM_1593420
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012071767.1
description PREDICTED: protein LYK5-like [Jatropha curcas]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID A0A067KQG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04381 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein lyk5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050399_010 0.0 - - PREDICTED: protein LYK5-like [Jatropha curcas]
2 Hb_070277_010 0.2067636133 - - PREDICTED: purine permease 3-like [Jatropha curcas]
3 Hb_003052_200 0.2144587247 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
4 Hb_000106_070 0.2246135868 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
5 Hb_011970_040 0.2272920431 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000670_110 0.2394121639 - - l-asparaginase, putative [Ricinus communis]
7 Hb_001951_030 0.2449916682 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
8 Hb_007416_150 0.2463001052 - - sarcosine oxidase, putative [Ricinus communis]
9 Hb_001863_460 0.2495055626 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
10 Hb_000042_250 0.2516775517 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
11 Hb_004195_110 0.2528083208 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
12 Hb_002917_030 0.2545406436 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
13 Hb_002917_020 0.2577826039 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
14 Hb_011618_040 0.2608408807 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002304_140 0.2620986789 - - ring finger protein, putative [Ricinus communis]
16 Hb_002598_010 0.2623643109 - - sugar transporter, putative [Ricinus communis]
17 Hb_008020_010 0.2672374869 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
18 Hb_002760_030 0.2680172173 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
19 Hb_007729_010 0.2689231034 - - unnamed protein product [Vitis vinifera]
20 Hb_001248_030 0.2699014691 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_050399_010 Hb_050399_010 Hb_070277_010 Hb_070277_010 Hb_050399_010--Hb_070277_010 Hb_003052_200 Hb_003052_200 Hb_050399_010--Hb_003052_200 Hb_000106_070 Hb_000106_070 Hb_050399_010--Hb_000106_070 Hb_011970_040 Hb_011970_040 Hb_050399_010--Hb_011970_040 Hb_000670_110 Hb_000670_110 Hb_050399_010--Hb_000670_110 Hb_001951_030 Hb_001951_030 Hb_050399_010--Hb_001951_030 Hb_070277_010--Hb_003052_200 Hb_004195_110 Hb_004195_110 Hb_070277_010--Hb_004195_110 Hb_070277_010--Hb_000106_070 Hb_070277_010--Hb_000670_110 Hb_002304_140 Hb_002304_140 Hb_070277_010--Hb_002304_140 Hb_003052_200--Hb_000106_070 Hb_003052_200--Hb_000670_110 Hb_001248_030 Hb_001248_030 Hb_003052_200--Hb_001248_030 Hb_003052_200--Hb_011970_040 Hb_003052_200--Hb_002304_140 Hb_000106_070--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_000106_070--Hb_011618_040 Hb_003299_010 Hb_003299_010 Hb_000106_070--Hb_003299_010 Hb_000106_070--Hb_011970_040 Hb_003119_070 Hb_003119_070 Hb_000106_070--Hb_003119_070 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_011970_040--Hb_000670_110 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_002783_320 Hb_002783_320 Hb_011970_040--Hb_002783_320 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_011970_040--Hb_001248_030 Hb_000670_110--Hb_004195_110 Hb_000670_110--Hb_011618_040 Hb_000670_110--Hb_001248_030 Hb_005157_010 Hb_005157_010 Hb_001951_030--Hb_005157_010 Hb_007416_150 Hb_007416_150 Hb_001951_030--Hb_007416_150 Hb_001951_030--Hb_000670_110 Hb_001951_030--Hb_011618_040 Hb_089920_010 Hb_089920_010 Hb_001951_030--Hb_089920_010 Hb_008225_100 Hb_008225_100 Hb_001951_030--Hb_008225_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213214 1.13624 0.0911531 0.123726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129944 0 0.173643 1.35564 0

CAGE analysis