Hb_008225_100

Information

Type -
Description -
Location Contig8225: 51204-55950
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59638: 51278-52000
cDNA
(Sanger)
(ID:Location)		 018_O07.ab1: 51278-52000

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008225_100 0.0 - - -
2 Hb_008020_010 0.1267937184 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
3 Hb_002917_030 0.1449040192 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
4 Hb_005000_220 0.1496110846 - - gulonolactone oxidase, putative [Ricinus communis]
5 Hb_001951_090 0.1677526998 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_006106_020 0.1720917341 - - ring finger protein, putative [Ricinus communis]
7 Hb_002553_080 0.1721051881 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
8 Hb_017987_040 0.1727332015 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
9 Hb_006501_120 0.1748514989 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
10 Hb_002917_020 0.175294119 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
11 Hb_001489_030 0.1754301089 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
12 Hb_001073_020 0.1772272797 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
13 Hb_008616_020 0.1778874873 - - unnamed protein product [Vitis vinifera]
14 Hb_000101_060 0.1780916512 - - -
15 Hb_000116_390 0.1782213781 - - Mlo protein [Hevea brasiliensis]
16 Hb_005550_070 0.1785596521 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
17 Hb_002400_250 0.1801975625 - - amino acid binding protein, putative [Ricinus communis]
18 Hb_000300_570 0.1816433444 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
19 Hb_002677_010 0.1824870732 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
20 Hb_000185_060 0.1825745652 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008225_100 Hb_008225_100 Hb_008020_010 Hb_008020_010 Hb_008225_100--Hb_008020_010 Hb_002917_030 Hb_002917_030 Hb_008225_100--Hb_002917_030 Hb_005000_220 Hb_005000_220 Hb_008225_100--Hb_005000_220 Hb_001951_090 Hb_001951_090 Hb_008225_100--Hb_001951_090 Hb_006106_020 Hb_006106_020 Hb_008225_100--Hb_006106_020 Hb_002553_080 Hb_002553_080 Hb_008225_100--Hb_002553_080 Hb_008020_010--Hb_002917_030 Hb_008020_010--Hb_001951_090 Hb_001596_040 Hb_001596_040 Hb_008020_010--Hb_001596_040 Hb_001952_110 Hb_001952_110 Hb_008020_010--Hb_001952_110 Hb_002917_020 Hb_002917_020 Hb_008020_010--Hb_002917_020 Hb_001489_030 Hb_001489_030 Hb_002917_030--Hb_001489_030 Hb_002917_030--Hb_001596_040 Hb_002917_030--Hb_002917_020 Hb_000043_080 Hb_000043_080 Hb_002917_030--Hb_000043_080 Hb_012053_030 Hb_012053_030 Hb_002917_030--Hb_012053_030 Hb_017987_040 Hb_017987_040 Hb_005000_220--Hb_017987_040 Hb_000322_200 Hb_000322_200 Hb_005000_220--Hb_000322_200 Hb_007666_040 Hb_007666_040 Hb_005000_220--Hb_007666_040 Hb_005000_220--Hb_001489_030 Hb_005000_220--Hb_006106_020 Hb_005000_220--Hb_002917_030 Hb_001951_090--Hb_001952_110 Hb_001951_090--Hb_002917_020 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_001951_090--Hb_002917_030 Hb_012019_020 Hb_012019_020 Hb_001951_090--Hb_012019_020 Hb_000101_060 Hb_000101_060 Hb_006106_020--Hb_000101_060 Hb_008503_020 Hb_008503_020 Hb_006106_020--Hb_008503_020 Hb_006106_020--Hb_002553_080 Hb_012702_020 Hb_012702_020 Hb_006106_020--Hb_012702_020 Hb_004162_040 Hb_004162_040 Hb_006106_020--Hb_004162_040 Hb_003085_050 Hb_003085_050 Hb_002553_080--Hb_003085_050 Hb_157122_010 Hb_157122_010 Hb_002553_080--Hb_157122_010 Hb_002766_040 Hb_002766_040 Hb_002553_080--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_002553_080--Hb_007735_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258534 7.62339 0.81535 0.105805 0 0.166532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108508 0.255807 0 8.41773 0

CAGE analysis