Hb_005000_220

Information

Type -
Description -
Location Contig5000: 241267-243315
Sequence    

Annotation

kegg
ID rcu:RCOM_1047010
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_002514119.1
description gulonolactone oxidase, putative [Ricinus communis]
swissprot
ID Q9LTS3
description Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1
trembl
ID B9RK75
description Gulonolactone oxidase, putative OS=Ricinus communis GN=RCOM_1047010 PE=4 SV=1
Gene Ontology
ID GO:0008131
description cytokinin dehydrogenase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_220 0.0 - - gulonolactone oxidase, putative [Ricinus communis]
2 Hb_017987_040 0.0920083595 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
3 Hb_000322_200 0.100034943 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
4 Hb_007666_040 0.1148812653 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
5 Hb_001489_030 0.1182784814 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
6 Hb_006106_020 0.127637299 - - ring finger protein, putative [Ricinus communis]
7 Hb_002917_030 0.1289866779 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
8 Hb_012053_030 0.130472921 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
9 Hb_006501_120 0.1325017771 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
10 Hb_003117_060 0.1363072588 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_000300_570 0.1364732321 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
12 Hb_008503_020 0.1438836648 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_001951_090 0.1473375388 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_000265_010 0.1488620119 - - amino acid transporter, putative [Ricinus communis]
15 Hb_008225_100 0.1496110846 - - -
16 Hb_000116_390 0.1517232158 - - Mlo protein [Hevea brasiliensis]
17 Hb_002555_020 0.1528188534 - - Receptor-like protein kinase [Medicago truncatula]
18 Hb_008020_010 0.1559988533 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
19 Hb_008053_070 0.1592469377 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
20 Hb_006198_150 0.1633428119 - - -

Gene co-expression network

sample Hb_005000_220 Hb_005000_220 Hb_017987_040 Hb_017987_040 Hb_005000_220--Hb_017987_040 Hb_000322_200 Hb_000322_200 Hb_005000_220--Hb_000322_200 Hb_007666_040 Hb_007666_040 Hb_005000_220--Hb_007666_040 Hb_001489_030 Hb_001489_030 Hb_005000_220--Hb_001489_030 Hb_006106_020 Hb_006106_020 Hb_005000_220--Hb_006106_020 Hb_002917_030 Hb_002917_030 Hb_005000_220--Hb_002917_030 Hb_006198_150 Hb_006198_150 Hb_017987_040--Hb_006198_150 Hb_017987_040--Hb_001489_030 Hb_008503_020 Hb_008503_020 Hb_017987_040--Hb_008503_020 Hb_017987_040--Hb_007666_040 Hb_008053_070 Hb_008053_070 Hb_017987_040--Hb_008053_070 Hb_003117_060 Hb_003117_060 Hb_000322_200--Hb_003117_060 Hb_106969_010 Hb_106969_010 Hb_000322_200--Hb_106969_010 Hb_000322_200--Hb_007666_040 Hb_001953_130 Hb_001953_130 Hb_000322_200--Hb_001953_130 Hb_000116_390 Hb_000116_390 Hb_000322_200--Hb_000116_390 Hb_007666_040--Hb_003117_060 Hb_003385_090 Hb_003385_090 Hb_007666_040--Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_007666_040--Hb_000535_030 Hb_012053_030 Hb_012053_030 Hb_007666_040--Hb_012053_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_007666_040--Hb_001489_030 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_001489_030--Hb_002917_030 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_001489_030--Hb_012053_030 Hb_000101_060 Hb_000101_060 Hb_006106_020--Hb_000101_060 Hb_006106_020--Hb_008503_020 Hb_002553_080 Hb_002553_080 Hb_006106_020--Hb_002553_080 Hb_012702_020 Hb_012702_020 Hb_006106_020--Hb_012702_020 Hb_004162_040 Hb_004162_040 Hb_006106_020--Hb_004162_040 Hb_008020_010 Hb_008020_010 Hb_002917_030--Hb_008020_010 Hb_001596_040 Hb_001596_040 Hb_002917_030--Hb_001596_040 Hb_002917_020 Hb_002917_020 Hb_002917_030--Hb_002917_020 Hb_002917_030--Hb_000043_080 Hb_002917_030--Hb_012053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.30236 0.186384 0.0779137 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037332 0.0881022 0 2.05619 0.0610048

CAGE analysis