Hb_001953_130

Information

Type -
Description -
Location Contig1953: 145129-145650
Sequence    

Annotation

kegg
ID tcc:TCM_014696
description Calmodulin binding protein, putative
nr
ID XP_012090790.1
description PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID A0A067JRG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26411 PE=4 SV=1
Gene Ontology
ID GO:0009733
description calmodulin binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_130 0.0 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
2 Hb_000116_390 0.0735571049 - - Mlo protein [Hevea brasiliensis]
3 Hb_011909_030 0.1082464181 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
4 Hb_003253_060 0.1095048901 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
5 Hb_000031_130 0.1096792457 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
6 Hb_106969_010 0.1107712588 - - Cytochrome P450 76C4 [Glycine soja]
7 Hb_012053_030 0.1109710458 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
8 Hb_009083_080 0.1139295831 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000322_200 0.1175360025 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
10 Hb_001376_040 0.1199430117 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
11 Hb_004656_020 0.1200858502 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
12 Hb_000265_010 0.1255971082 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000185_060 0.1265249801 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
14 Hb_001114_210 0.1296347385 - - PREDICTED: periaxin [Jatropha curcas]
15 Hb_000300_570 0.1302070003 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
16 Hb_126077_020 0.131177265 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
17 Hb_003376_340 0.1331298751 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000077_470 0.1332003188 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
19 Hb_008616_020 0.1336490948 - - unnamed protein product [Vitis vinifera]
20 Hb_006418_010 0.1369108901 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001953_130 Hb_001953_130 Hb_000116_390 Hb_000116_390 Hb_001953_130--Hb_000116_390 Hb_011909_030 Hb_011909_030 Hb_001953_130--Hb_011909_030 Hb_003253_060 Hb_003253_060 Hb_001953_130--Hb_003253_060 Hb_000031_130 Hb_000031_130 Hb_001953_130--Hb_000031_130 Hb_106969_010 Hb_106969_010 Hb_001953_130--Hb_106969_010 Hb_012053_030 Hb_012053_030 Hb_001953_130--Hb_012053_030 Hb_000116_390--Hb_000031_130 Hb_001376_040 Hb_001376_040 Hb_000116_390--Hb_001376_040 Hb_001114_210 Hb_001114_210 Hb_000116_390--Hb_001114_210 Hb_008616_020 Hb_008616_020 Hb_000116_390--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000116_390--Hb_000185_060 Hb_011909_030--Hb_106969_010 Hb_046117_050 Hb_046117_050 Hb_011909_030--Hb_046117_050 Hb_011909_030--Hb_000116_390 Hb_003376_340 Hb_003376_340 Hb_011909_030--Hb_003376_340 Hb_000260_320 Hb_000260_320 Hb_011909_030--Hb_000260_320 Hb_004656_020 Hb_004656_020 Hb_003253_060--Hb_004656_020 Hb_047690_010 Hb_047690_010 Hb_003253_060--Hb_047690_010 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_001487_020 Hb_001487_020 Hb_003253_060--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_003253_060--Hb_135811_020 Hb_150643_010 Hb_150643_010 Hb_003253_060--Hb_150643_010 Hb_000031_130--Hb_001376_040 Hb_000031_130--Hb_001114_210 Hb_000031_130--Hb_004656_020 Hb_000031_130--Hb_008616_020 Hb_000031_130--Hb_000185_060 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_118777_010 Hb_118777_010 Hb_106969_010--Hb_118777_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_003117_060 Hb_003117_060 Hb_106969_010--Hb_003117_060 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_000300_570 Hb_000300_570 Hb_012053_030--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_012053_030--Hb_000265_010 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_012053_030--Hb_000185_060 Hb_003086_200 Hb_003086_200 Hb_012053_030--Hb_003086_200 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.04642 0.128822 0.315718 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.40281 0

CAGE analysis