Hb_135811_020

Information

Type -
Description -
Location Contig135811: 23807-24452
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP27266.1
description hypothetical protein JCGZ_19965 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09964: 23887-24406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135811_020 0.0 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
2 Hb_047690_010 0.0579168891 - - Phosphoprotein phosphatase [Theobroma cacao]
3 Hb_150643_010 0.0631023869 - - lipid binding protein, putative [Ricinus communis]
4 Hb_001487_020 0.0758493224 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
5 Hb_003253_060 0.0860904372 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
6 Hb_046117_050 0.1013139006 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
7 Hb_000535_030 0.1022768274 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
8 Hb_000345_190 0.1071900504 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
9 Hb_004656_020 0.1079978125 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
10 Hb_001080_040 0.1112149418 - - cytochrome P450, putative [Ricinus communis]
11 Hb_128912_010 0.111475341 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
12 Hb_003385_090 0.1135277605 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
13 Hb_005396_100 0.1199976958 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001363_010 0.1209747243 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
15 Hb_000532_060 0.1251909807 - - copper-transporting atpase p-type, putative [Ricinus communis]
16 Hb_003376_340 0.1260409088 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011909_030 0.1315404505 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
18 Hb_000260_320 0.1316086992 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
19 Hb_106969_010 0.1335118254 - - Cytochrome P450 76C4 [Glycine soja]
20 Hb_001114_210 0.134792512 - - PREDICTED: periaxin [Jatropha curcas]

Gene co-expression network

sample Hb_135811_020 Hb_135811_020 Hb_047690_010 Hb_047690_010 Hb_135811_020--Hb_047690_010 Hb_150643_010 Hb_150643_010 Hb_135811_020--Hb_150643_010 Hb_001487_020 Hb_001487_020 Hb_135811_020--Hb_001487_020 Hb_003253_060 Hb_003253_060 Hb_135811_020--Hb_003253_060 Hb_046117_050 Hb_046117_050 Hb_135811_020--Hb_046117_050 Hb_000535_030 Hb_000535_030 Hb_135811_020--Hb_000535_030 Hb_047690_010--Hb_150643_010 Hb_047690_010--Hb_001487_020 Hb_047690_010--Hb_003253_060 Hb_004656_020 Hb_004656_020 Hb_047690_010--Hb_004656_020 Hb_047690_010--Hb_046117_050 Hb_150643_010--Hb_001487_020 Hb_150643_010--Hb_003253_060 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_046117_050 Hb_005081_080 Hb_005081_080 Hb_001487_020--Hb_005081_080 Hb_003253_060--Hb_004656_020 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_046117_050--Hb_000532_060 Hb_003376_340 Hb_003376_340 Hb_046117_050--Hb_003376_340 Hb_000345_190 Hb_000345_190 Hb_046117_050--Hb_000345_190 Hb_046117_050--Hb_005081_080 Hb_003385_090 Hb_003385_090 Hb_000535_030--Hb_003385_090 Hb_007666_040 Hb_007666_040 Hb_000535_030--Hb_007666_040 Hb_003117_060 Hb_003117_060 Hb_000535_030--Hb_003117_060 Hb_032651_060 Hb_032651_060 Hb_000535_030--Hb_032651_060 Hb_001114_210 Hb_001114_210 Hb_000535_030--Hb_001114_210 Hb_001080_040 Hb_001080_040 Hb_000535_030--Hb_001080_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 95.8983 0.0480905 6.39288 0.109964 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 47.5842 0.802106

CAGE analysis