Hb_150643_010

Information

Type -
Description -
Location Contig150643: 228-1108
Sequence    

Annotation

kegg
ID rcu:RCOM_0646560
description lipid binding protein, putative
nr
ID XP_002524759.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID Q9LZH5
description Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1
trembl
ID B9SFJ0
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646560 PE=4 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150643_010 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_047690_010 0.0186638892 - - Phosphoprotein phosphatase [Theobroma cacao]
3 Hb_001487_020 0.0413503805 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
4 Hb_135811_020 0.0631023869 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
5 Hb_003253_060 0.0884590464 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
6 Hb_046117_050 0.1031662222 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
7 Hb_007785_020 0.1036238328 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_128912_010 0.105570099 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
9 Hb_000532_060 0.1060892046 - - copper-transporting atpase p-type, putative [Ricinus communis]
10 Hb_001080_040 0.1139183049 - - cytochrome P450, putative [Ricinus communis]
11 Hb_003376_340 0.1171072397 - - conserved hypothetical protein [Ricinus communis]
12 Hb_045810_010 0.1176778251 - - PREDICTED: laccase-12-like [Jatropha curcas]
13 Hb_000345_190 0.1196117091 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
14 Hb_004656_020 0.1200820264 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
15 Hb_005081_080 0.1243510558 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
16 Hb_000170_230 0.1254446815 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
17 Hb_012055_100 0.1256242795 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
18 Hb_000260_320 0.1293743618 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
19 Hb_000535_030 0.1312671022 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_005396_100 0.1345914984 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_150643_010 Hb_150643_010 Hb_047690_010 Hb_047690_010 Hb_150643_010--Hb_047690_010 Hb_001487_020 Hb_001487_020 Hb_150643_010--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_150643_010--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_150643_010--Hb_003253_060 Hb_046117_050 Hb_046117_050 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020 Hb_047690_010--Hb_001487_020 Hb_047690_010--Hb_135811_020 Hb_047690_010--Hb_003253_060 Hb_004656_020 Hb_004656_020 Hb_047690_010--Hb_004656_020 Hb_047690_010--Hb_046117_050 Hb_001487_020--Hb_135811_020 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_046117_050 Hb_005081_080 Hb_005081_080 Hb_001487_020--Hb_005081_080 Hb_135811_020--Hb_003253_060 Hb_135811_020--Hb_046117_050 Hb_000535_030 Hb_000535_030 Hb_135811_020--Hb_000535_030 Hb_003253_060--Hb_004656_020 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_046117_050--Hb_000532_060 Hb_003376_340 Hb_003376_340 Hb_046117_050--Hb_003376_340 Hb_000345_190 Hb_000345_190 Hb_046117_050--Hb_000345_190 Hb_046117_050--Hb_005081_080 Hb_045810_010 Hb_045810_010 Hb_007785_020--Hb_045810_010 Hb_002067_110 Hb_002067_110 Hb_007785_020--Hb_002067_110 Hb_000844_020 Hb_000844_020 Hb_007785_020--Hb_000844_020 Hb_001331_050 Hb_001331_050 Hb_007785_020--Hb_001331_050 Hb_066262_020 Hb_066262_020 Hb_007785_020--Hb_066262_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.669417 0 0.0496823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.291936 0

CAGE analysis