Hb_047690_010

Information

Type -
Description -
Location Contig47690: 2-550
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID XP_007099576.1
description Phosphoprotein phosphatase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID S1S434
description Phosphoprotein phosphatase OS=Theobroma cacao GN=TCM_046052 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047690_010 0.0 - - Phosphoprotein phosphatase [Theobroma cacao]
2 Hb_150643_010 0.0186638892 - - lipid binding protein, putative [Ricinus communis]
3 Hb_001487_020 0.0391823366 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
4 Hb_135811_020 0.0579168891 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
5 Hb_003253_060 0.0700036624 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
6 Hb_004656_020 0.1024092883 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
7 Hb_046117_050 0.102595067 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
8 Hb_128912_010 0.1076930674 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
9 Hb_001080_040 0.1092006929 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000532_060 0.1145508492 - - copper-transporting atpase p-type, putative [Ricinus communis]
11 Hb_003376_340 0.1160171119 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007785_020 0.120254491 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_000260_320 0.1225171409 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
14 Hb_005081_080 0.1234158123 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
15 Hb_000345_190 0.1266788372 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
16 Hb_000535_030 0.1268810419 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_012055_100 0.1277590699 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
18 Hb_000170_230 0.1343347991 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
19 Hb_045810_010 0.1349695626 - - PREDICTED: laccase-12-like [Jatropha curcas]
20 Hb_001114_210 0.1367296638 - - PREDICTED: periaxin [Jatropha curcas]

Gene co-expression network

sample Hb_047690_010 Hb_047690_010 Hb_150643_010 Hb_150643_010 Hb_047690_010--Hb_150643_010 Hb_001487_020 Hb_001487_020 Hb_047690_010--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_047690_010--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_047690_010--Hb_003253_060 Hb_004656_020 Hb_004656_020 Hb_047690_010--Hb_004656_020 Hb_046117_050 Hb_046117_050 Hb_047690_010--Hb_046117_050 Hb_150643_010--Hb_001487_020 Hb_150643_010--Hb_135811_020 Hb_150643_010--Hb_003253_060 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020 Hb_001487_020--Hb_135811_020 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_046117_050 Hb_005081_080 Hb_005081_080 Hb_001487_020--Hb_005081_080 Hb_135811_020--Hb_003253_060 Hb_135811_020--Hb_046117_050 Hb_000535_030 Hb_000535_030 Hb_135811_020--Hb_000535_030 Hb_003253_060--Hb_004656_020 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_001376_040 Hb_001376_040 Hb_004656_020--Hb_001376_040 Hb_004656_020--Hb_009083_080 Hb_000031_130 Hb_000031_130 Hb_004656_020--Hb_000031_130 Hb_032443_030 Hb_032443_030 Hb_004656_020--Hb_032443_030 Hb_001114_210 Hb_001114_210 Hb_004656_020--Hb_001114_210 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_046117_050--Hb_000532_060 Hb_003376_340 Hb_003376_340 Hb_046117_050--Hb_003376_340 Hb_000345_190 Hb_000345_190 Hb_046117_050--Hb_000345_190 Hb_046117_050--Hb_005081_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.78004 0 0.0583778 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.374657 0

CAGE analysis