Hb_000844_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig844: 37699-38274
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03590g
description hypothetical protein
nr
ID XP_012071724.1
description PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
swissprot
ID Q9FGD6
description Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1
trembl
ID A0A067KQJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04337 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000844_020 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
2 Hb_002067_110 0.0436926486 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
3 Hb_064855_010 0.0561895208 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_001271_040 0.0644500225 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
5 Hb_066262_020 0.0679492809 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
6 Hb_000796_100 0.0701462256 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_101778_020 0.0863692427 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
8 Hb_011924_010 0.0863965153 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
9 Hb_006586_020 0.0866277013 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_000123_320 0.0875541583 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
11 Hb_007785_020 0.0877770932 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_003430_010 0.0878174673 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
13 Hb_068447_010 0.0878648291 - - protein with unknown function [Ricinus communis]
14 Hb_007676_070 0.088628706 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
15 Hb_000764_060 0.0889718029 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
16 Hb_003392_020 0.0892551873 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
17 Hb_006011_060 0.0894309484 - - -
18 Hb_000756_040 0.0900432453 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_008078_040 0.0904405071 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
20 Hb_006616_050 0.0905675883 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]

Gene co-expression network

sample Hb_000844_020 Hb_000844_020 Hb_002067_110 Hb_002067_110 Hb_000844_020--Hb_002067_110 Hb_064855_010 Hb_064855_010 Hb_000844_020--Hb_064855_010 Hb_001271_040 Hb_001271_040 Hb_000844_020--Hb_001271_040 Hb_066262_020 Hb_066262_020 Hb_000844_020--Hb_066262_020 Hb_000796_100 Hb_000796_100 Hb_000844_020--Hb_000796_100 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_007785_020 Hb_007785_020 Hb_002067_110--Hb_007785_020 Hb_002067_110--Hb_066262_020 Hb_002067_110--Hb_064855_010 Hb_045810_010 Hb_045810_010 Hb_002067_110--Hb_045810_010 Hb_002067_110--Hb_001271_040 Hb_064855_010--Hb_066262_020 Hb_064855_010--Hb_000796_100 Hb_064855_010--Hb_001271_040 Hb_023827_010 Hb_023827_010 Hb_064855_010--Hb_023827_010 Hb_001403_100 Hb_001403_100 Hb_064855_010--Hb_001403_100 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_068447_010 Hb_068447_010 Hb_001271_040--Hb_068447_010 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_066262_020--Hb_068447_010 Hb_006452_140 Hb_006452_140 Hb_000796_100--Hb_006452_140 Hb_011924_030 Hb_011924_030 Hb_000796_100--Hb_011924_030 Hb_000796_100--Hb_006616_050 Hb_000796_100--Hb_023827_010 Hb_101778_020--Hb_006586_020 Hb_101778_020--Hb_011924_010 Hb_101778_020--Hb_000123_320 Hb_101778_020--Hb_003430_010 Hb_101778_020--Hb_068447_010 Hb_003392_020 Hb_003392_020 Hb_101778_020--Hb_003392_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0461648 133.411 0.147693 1.77503 0.179708 0.0715885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.168743 0 25.3922 0

CAGE analysis