Hb_002067_110

Information

Type -
Description -
Location Contig2067: 75866-79449
Sequence    

Annotation

kegg
ID pop:POPTR_0011s14430g
description POPTRDRAFT_888988; hypothetical protein
nr
ID XP_011016701.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9I0G8
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s14430g PE=4 SV=2
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_110 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
2 Hb_000844_020 0.0436926486 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
3 Hb_007785_020 0.0690324526 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_066262_020 0.069206726 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
5 Hb_064855_010 0.0783619663 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_045810_010 0.0799051748 - - PREDICTED: laccase-12-like [Jatropha curcas]
7 Hb_001271_040 0.0818569837 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
8 Hb_000977_160 0.0920426852 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
9 Hb_000796_100 0.0981930323 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
10 Hb_006011_060 0.0987707009 - - -
11 Hb_003392_020 0.0987759258 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
12 Hb_008248_010 0.0990456082 - - -
13 Hb_003430_010 0.0990646712 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
14 Hb_000123_320 0.0991911088 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
15 Hb_185340_020 0.0999278621 - - -
16 Hb_007259_030 0.0999709889 - - -
17 Hb_006586_020 0.1001291034 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
18 Hb_000035_360 0.1008675378 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
19 Hb_101778_020 0.1009182527 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
20 Hb_000233_060 0.101380223 - - hypothetical protein JCGZ_14793 [Jatropha curcas]

Gene co-expression network

sample Hb_002067_110 Hb_002067_110 Hb_000844_020 Hb_000844_020 Hb_002067_110--Hb_000844_020 Hb_007785_020 Hb_007785_020 Hb_002067_110--Hb_007785_020 Hb_066262_020 Hb_066262_020 Hb_002067_110--Hb_066262_020 Hb_064855_010 Hb_064855_010 Hb_002067_110--Hb_064855_010 Hb_045810_010 Hb_045810_010 Hb_002067_110--Hb_045810_010 Hb_001271_040 Hb_001271_040 Hb_002067_110--Hb_001271_040 Hb_000844_020--Hb_064855_010 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_066262_020 Hb_000796_100 Hb_000796_100 Hb_000844_020--Hb_000796_100 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_007785_020--Hb_045810_010 Hb_007785_020--Hb_000844_020 Hb_001331_050 Hb_001331_050 Hb_007785_020--Hb_001331_050 Hb_007785_020--Hb_066262_020 Hb_150643_010 Hb_150643_010 Hb_007785_020--Hb_150643_010 Hb_066262_020--Hb_064855_010 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010 Hb_064855_010--Hb_000796_100 Hb_064855_010--Hb_001271_040 Hb_023827_010 Hb_023827_010 Hb_064855_010--Hb_023827_010 Hb_001403_100 Hb_001403_100 Hb_064855_010--Hb_001403_100 Hb_045810_010--Hb_001331_050 Hb_006351_080 Hb_006351_080 Hb_045810_010--Hb_006351_080 Hb_045810_010--Hb_000844_020 Hb_000233_060 Hb_000233_060 Hb_045810_010--Hb_000233_060 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_001271_040--Hb_068447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00677206 14.7952 0.00831516 0.27602 0 0.0143459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.012413 0.0390737 0 3.27128 0

CAGE analysis