Hb_032651_060

Information

Type -
Description -
Location Contig32651: 25436-27034
Sequence    

Annotation

kegg
ID rcu:RCOM_0618990
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002528851.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SS82
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0618990 PE=4 SV=1
Gene Ontology
ID GO:0016020
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032651_060 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_003385_090 0.0599743428 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
3 Hb_000535_030 0.0955682894 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
4 Hb_049562_010 0.0978653495 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
5 Hb_001080_040 0.1031202891 - - cytochrome P450, putative [Ricinus communis]
6 Hb_001363_010 0.104224839 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
7 Hb_005649_120 0.1079788518 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
8 Hb_000238_010 0.1092271796 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002154_090 0.1092621558 - - -
10 Hb_001114_210 0.1099115271 - - PREDICTED: periaxin [Jatropha curcas]
11 Hb_154646_010 0.1104417206 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001817_070 0.1109056729 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_175426_010 0.1122825207 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
14 Hb_000135_040 0.1124707955 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
15 Hb_008953_020 0.1125164806 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
16 Hb_008221_010 0.1137901574 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
17 Hb_008062_020 0.1140449465 - - PREDICTED: periaxin-like [Populus euphratica]
18 Hb_013654_020 0.1148560011 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
19 Hb_048653_010 0.114899808 - - PREDICTED: mavicyanin [Jatropha curcas]
20 Hb_042239_010 0.1152954413 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_032651_060 Hb_032651_060 Hb_003385_090 Hb_003385_090 Hb_032651_060--Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_032651_060--Hb_000535_030 Hb_049562_010 Hb_049562_010 Hb_032651_060--Hb_049562_010 Hb_001080_040 Hb_001080_040 Hb_032651_060--Hb_001080_040 Hb_001363_010 Hb_001363_010 Hb_032651_060--Hb_001363_010 Hb_005649_120 Hb_005649_120 Hb_032651_060--Hb_005649_120 Hb_003385_090--Hb_000535_030 Hb_007666_040 Hb_007666_040 Hb_003385_090--Hb_007666_040 Hb_003385_090--Hb_001080_040 Hb_003385_090--Hb_049562_010 Hb_001114_210 Hb_001114_210 Hb_003385_090--Hb_001114_210 Hb_000535_030--Hb_007666_040 Hb_003117_060 Hb_003117_060 Hb_000535_030--Hb_003117_060 Hb_000535_030--Hb_001114_210 Hb_000535_030--Hb_001080_040 Hb_049562_010--Hb_005649_120 Hb_175426_010 Hb_175426_010 Hb_049562_010--Hb_175426_010 Hb_049562_010--Hb_001080_040 Hb_002154_090 Hb_002154_090 Hb_049562_010--Hb_002154_090 Hb_000238_010 Hb_000238_010 Hb_049562_010--Hb_000238_010 Hb_007627_020 Hb_007627_020 Hb_049562_010--Hb_007627_020 Hb_039814_010 Hb_039814_010 Hb_001080_040--Hb_039814_010 Hb_154646_010 Hb_154646_010 Hb_001080_040--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_001080_040--Hb_001817_070 Hb_000135_040 Hb_000135_040 Hb_001080_040--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_001080_040--Hb_008953_020 Hb_005396_100 Hb_005396_100 Hb_001363_010--Hb_005396_100 Hb_000977_160 Hb_000977_160 Hb_001363_010--Hb_000977_160 Hb_001363_010--Hb_000535_030 Hb_001363_010--Hb_003385_090 Hb_012268_010 Hb_012268_010 Hb_001363_010--Hb_012268_010 Hb_005649_120--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_005649_120--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_005649_120--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_005649_120--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_005649_120--Hb_004458_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0127479 2.38492 0.0189598 0.00929129 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28408 0.0478939

CAGE analysis