Hb_000977_160

Information

Type -
Description -
Location Contig977: 132769-137335
Sequence    

Annotation

kegg
ID tcc:TCM_011263
description Serine-threonine protein kinase, plant-type, putative
nr
ID XP_007045500.1
description Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A061EAB6
description Serine-threonine protein kinase, plant-type, putative OS=Theobroma cacao GN=TCM_011263 PE=4 SV=1
Gene Ontology
ID GO:0016491
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64168: 133357-133480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_160 0.0 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
2 Hb_005396_100 0.0741887748 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001363_010 0.0879006286 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
4 Hb_002067_110 0.0920426852 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
5 Hb_006353_010 0.0977410533 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
6 Hb_000844_020 0.107702882 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
7 Hb_123238_010 0.1085185509 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
8 Hb_003344_020 0.1085525231 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
9 Hb_001659_030 0.108599922 - - -
10 Hb_080293_010 0.1088879062 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
11 Hb_000002_160 0.1093292356 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
12 Hb_187024_020 0.1107093275 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
13 Hb_039814_010 0.1119315882 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
14 Hb_007259_030 0.112552121 - - -
15 Hb_185340_020 0.1126270853 - - -
16 Hb_007785_020 0.1140182451 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_008248_010 0.1149518865 - - -
18 Hb_000035_360 0.1151506442 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
19 Hb_001271_040 0.1152302914 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
20 Hb_001136_140 0.1153219225 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]

Gene co-expression network

sample Hb_000977_160 Hb_000977_160 Hb_005396_100 Hb_005396_100 Hb_000977_160--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_000977_160--Hb_001363_010 Hb_002067_110 Hb_002067_110 Hb_000977_160--Hb_002067_110 Hb_006353_010 Hb_006353_010 Hb_000977_160--Hb_006353_010 Hb_000844_020 Hb_000844_020 Hb_000977_160--Hb_000844_020 Hb_123238_010 Hb_123238_010 Hb_000977_160--Hb_123238_010 Hb_005396_100--Hb_001363_010 Hb_000233_060 Hb_000233_060 Hb_005396_100--Hb_000233_060 Hb_007785_020 Hb_007785_020 Hb_005396_100--Hb_007785_020 Hb_005396_100--Hb_002067_110 Hb_000345_190 Hb_000345_190 Hb_005396_100--Hb_000345_190 Hb_000535_030 Hb_000535_030 Hb_001363_010--Hb_000535_030 Hb_003385_090 Hb_003385_090 Hb_001363_010--Hb_003385_090 Hb_032651_060 Hb_032651_060 Hb_001363_010--Hb_032651_060 Hb_012268_010 Hb_012268_010 Hb_001363_010--Hb_012268_010 Hb_002067_110--Hb_000844_020 Hb_002067_110--Hb_007785_020 Hb_066262_020 Hb_066262_020 Hb_002067_110--Hb_066262_020 Hb_064855_010 Hb_064855_010 Hb_002067_110--Hb_064855_010 Hb_045810_010 Hb_045810_010 Hb_002067_110--Hb_045810_010 Hb_001271_040 Hb_001271_040 Hb_002067_110--Hb_001271_040 Hb_006353_010--Hb_001271_040 Hb_011924_010 Hb_011924_010 Hb_006353_010--Hb_011924_010 Hb_068447_010 Hb_068447_010 Hb_006353_010--Hb_068447_010 Hb_101778_020 Hb_101778_020 Hb_006353_010--Hb_101778_020 Hb_007676_070 Hb_007676_070 Hb_006353_010--Hb_007676_070 Hb_006586_020 Hb_006586_020 Hb_006353_010--Hb_006586_020 Hb_000844_020--Hb_064855_010 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_066262_020 Hb_000796_100 Hb_000796_100 Hb_000844_020--Hb_000796_100 Hb_000844_020--Hb_101778_020 Hb_003344_020 Hb_003344_020 Hb_123238_010--Hb_003344_020 Hb_001659_030 Hb_001659_030 Hb_123238_010--Hb_001659_030 Hb_080293_010 Hb_080293_010 Hb_123238_010--Hb_080293_010 Hb_000002_160 Hb_000002_160 Hb_123238_010--Hb_000002_160 Hb_187024_020 Hb_187024_020 Hb_123238_010--Hb_187024_020 Hb_007259_030 Hb_007259_030 Hb_123238_010--Hb_007259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.42705 0.014229 0.0474427 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0145322 0.0114357 0 1.27908 0.048797

CAGE analysis