Hb_000002_160

Information

Type -
Description -
Location Contig2: 296162-296547
Sequence    

Annotation

kegg
ID tcc:TCM_021030
description hypothetical protein
nr
ID XP_007035302.1
description Uncharacterized protein TCM_021030 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ENL9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_021030 PE=4 SV=1
Gene Ontology
ID GO:0009507
description at5g43400 mwf20_9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_160 0.0 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
2 Hb_080293_010 0.0043422117 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
3 Hb_187024_020 0.0086696314 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
4 Hb_001659_030 0.0090857097 - - -
5 Hb_003344_020 0.0105392881 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
6 Hb_123238_010 0.0125621696 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
7 Hb_001136_140 0.0258828286 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
8 Hb_004944_030 0.0267353758 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_072149_010 0.0284329854 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
10 Hb_002400_110 0.0286750055 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001100_020 0.0338535 - - -
12 Hb_010452_030 0.0351706286 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
13 Hb_000045_270 0.0378610007 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007259_030 0.0434312437 - - -
15 Hb_122911_010 0.0435427894 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
16 Hb_185340_020 0.0437138827 - - -
17 Hb_188168_010 0.047057332 - - Arylacetamide deacetylase, putative [Ricinus communis]
18 Hb_002342_040 0.0507379333 - - FERONIA, partial [Arabis alpina]
19 Hb_008248_010 0.0515238161 - - -
20 Hb_039814_010 0.0533369263 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_160 Hb_000002_160 Hb_080293_010 Hb_080293_010 Hb_000002_160--Hb_080293_010 Hb_187024_020 Hb_187024_020 Hb_000002_160--Hb_187024_020 Hb_001659_030 Hb_001659_030 Hb_000002_160--Hb_001659_030 Hb_003344_020 Hb_003344_020 Hb_000002_160--Hb_003344_020 Hb_123238_010 Hb_123238_010 Hb_000002_160--Hb_123238_010 Hb_001136_140 Hb_001136_140 Hb_000002_160--Hb_001136_140 Hb_080293_010--Hb_001659_030 Hb_080293_010--Hb_003344_020 Hb_080293_010--Hb_123238_010 Hb_080293_010--Hb_187024_020 Hb_080293_010--Hb_001136_140 Hb_187024_020--Hb_001136_140 Hb_187024_020--Hb_001659_030 Hb_004944_030 Hb_004944_030 Hb_187024_020--Hb_004944_030 Hb_187024_020--Hb_003344_020 Hb_001659_030--Hb_003344_020 Hb_001659_030--Hb_123238_010 Hb_007259_030 Hb_007259_030 Hb_001659_030--Hb_007259_030 Hb_003344_020--Hb_123238_010 Hb_003344_020--Hb_007259_030 Hb_123238_010--Hb_187024_020 Hb_123238_010--Hb_007259_030 Hb_001136_140--Hb_004944_030 Hb_072149_010 Hb_072149_010 Hb_001136_140--Hb_072149_010 Hb_002400_110 Hb_002400_110 Hb_001136_140--Hb_002400_110 Hb_001100_020 Hb_001100_020 Hb_001136_140--Hb_001100_020 Hb_010452_030 Hb_010452_030 Hb_001136_140--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_001136_140--Hb_000045_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.332631 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103577 0

CAGE analysis