Hb_003344_020

Information

Type -
Description -
Location Contig3344: 62807-63673
Sequence    

Annotation

kegg
ID cmo:103501197
description uncharacterized LOC103501197
nr
ID XP_008462935.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A061FZ93
description Uncharacterized protein OS=Theobroma cacao GN=TCM_014378 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003344_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
2 Hb_001659_030 0.0014536659 - - -
3 Hb_123238_010 0.002023051 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
4 Hb_080293_010 0.0061972535 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
5 Hb_000002_160 0.0105392881 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
6 Hb_187024_020 0.0192078451 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
7 Hb_007259_030 0.0329019598 - - -
8 Hb_185340_020 0.0331847551 - - -
9 Hb_001136_140 0.0364161913 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
10 Hb_004944_030 0.0372684081 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
11 Hb_072149_010 0.0389653352 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
12 Hb_002400_110 0.0392072553 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008248_010 0.040999512 - - -
14 Hb_001100_020 0.0443834538 - - -
15 Hb_010452_030 0.045699951 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
16 Hb_000045_270 0.0483889746 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006011_060 0.0488308941 - - -
18 Hb_003392_020 0.0495134198 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
19 Hb_122911_010 0.0540676593 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
20 Hb_188168_010 0.055614394 - - Arylacetamide deacetylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003344_020 Hb_003344_020 Hb_001659_030 Hb_001659_030 Hb_003344_020--Hb_001659_030 Hb_123238_010 Hb_123238_010 Hb_003344_020--Hb_123238_010 Hb_080293_010 Hb_080293_010 Hb_003344_020--Hb_080293_010 Hb_000002_160 Hb_000002_160 Hb_003344_020--Hb_000002_160 Hb_187024_020 Hb_187024_020 Hb_003344_020--Hb_187024_020 Hb_007259_030 Hb_007259_030 Hb_003344_020--Hb_007259_030 Hb_001659_030--Hb_123238_010 Hb_001659_030--Hb_080293_010 Hb_001659_030--Hb_000002_160 Hb_001659_030--Hb_187024_020 Hb_001659_030--Hb_007259_030 Hb_123238_010--Hb_080293_010 Hb_123238_010--Hb_000002_160 Hb_123238_010--Hb_187024_020 Hb_123238_010--Hb_007259_030 Hb_080293_010--Hb_000002_160 Hb_080293_010--Hb_187024_020 Hb_001136_140 Hb_001136_140 Hb_080293_010--Hb_001136_140 Hb_000002_160--Hb_187024_020 Hb_000002_160--Hb_001136_140 Hb_187024_020--Hb_001136_140 Hb_004944_030 Hb_004944_030 Hb_187024_020--Hb_004944_030 Hb_185340_020 Hb_185340_020 Hb_007259_030--Hb_185340_020 Hb_008248_010 Hb_008248_010 Hb_007259_030--Hb_008248_010 Hb_006011_060 Hb_006011_060 Hb_007259_030--Hb_006011_060 Hb_003392_020 Hb_003392_020 Hb_007259_030--Hb_003392_020 Hb_003430_010 Hb_003430_010 Hb_007259_030--Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_007259_030--Hb_000123_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104389 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0306497 0

CAGE analysis