Hb_080293_010

Information

Type -
Description -
Location Contig80293: 1203-2581
Sequence    

Annotation

kegg
ID egr:104447458
description cysteine-rich receptor-like protein kinase 10
nr
ID XP_010267799.1
description PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID V4TPB4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017818mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description cysteine-rich receptor-like protein kinase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080293_010 0.0 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
2 Hb_000002_160 0.0043422117 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
3 Hb_001659_030 0.0047436146 - - -
4 Hb_003344_020 0.0061972535 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
5 Hb_123238_010 0.0082202388 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
6 Hb_187024_020 0.0130115461 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
7 Hb_001136_140 0.0302230327 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
8 Hb_004944_030 0.0310754581 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_072149_010 0.0327728148 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
10 Hb_002400_110 0.0330147977 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001100_020 0.0381924324 - - -
12 Hb_007259_030 0.0390938807 - - -
13 Hb_185340_020 0.0393765887 - - -
14 Hb_010452_030 0.0395093227 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
15 Hb_000045_270 0.0421991838 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008248_010 0.0471886383 - - -
17 Hb_122911_010 0.0478797876 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
18 Hb_188168_010 0.0504933855 - - Arylacetamide deacetylase, putative [Ricinus communis]
19 Hb_006011_060 0.0550167167 - - -
20 Hb_002342_040 0.0550732296 - - FERONIA, partial [Arabis alpina]

Gene co-expression network

sample Hb_080293_010 Hb_080293_010 Hb_000002_160 Hb_000002_160 Hb_080293_010--Hb_000002_160 Hb_001659_030 Hb_001659_030 Hb_080293_010--Hb_001659_030 Hb_003344_020 Hb_003344_020 Hb_080293_010--Hb_003344_020 Hb_123238_010 Hb_123238_010 Hb_080293_010--Hb_123238_010 Hb_187024_020 Hb_187024_020 Hb_080293_010--Hb_187024_020 Hb_001136_140 Hb_001136_140 Hb_080293_010--Hb_001136_140 Hb_000002_160--Hb_187024_020 Hb_000002_160--Hb_001659_030 Hb_000002_160--Hb_003344_020 Hb_000002_160--Hb_123238_010 Hb_000002_160--Hb_001136_140 Hb_001659_030--Hb_003344_020 Hb_001659_030--Hb_123238_010 Hb_001659_030--Hb_187024_020 Hb_007259_030 Hb_007259_030 Hb_001659_030--Hb_007259_030 Hb_003344_020--Hb_123238_010 Hb_003344_020--Hb_187024_020 Hb_003344_020--Hb_007259_030 Hb_123238_010--Hb_187024_020 Hb_123238_010--Hb_007259_030 Hb_187024_020--Hb_001136_140 Hb_004944_030 Hb_004944_030 Hb_187024_020--Hb_004944_030 Hb_001136_140--Hb_004944_030 Hb_072149_010 Hb_072149_010 Hb_001136_140--Hb_072149_010 Hb_002400_110 Hb_002400_110 Hb_001136_140--Hb_002400_110 Hb_001100_020 Hb_001100_020 Hb_001136_140--Hb_001100_020 Hb_010452_030 Hb_010452_030 Hb_001136_140--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_001136_140--Hb_000045_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.202346 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0615072 0

CAGE analysis