Hb_072149_010

Information

Type -
Description -
Location Contig72149: 3156-4088
Sequence    

Annotation

kegg
ID cic:CICLE_v10006890mg
description hypothetical protein
nr
ID XP_006421106.1
description hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4SBL0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006890mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072149_010 0.0 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
2 Hb_002400_110 0.0002421309 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004944_030 0.0016983364 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
4 Hb_001136_140 0.002551215 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
5 Hb_001100_020 0.0054234239 - - -
6 Hb_010452_030 0.0067413932 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
7 Hb_000045_270 0.0094336431 - - conserved hypothetical protein [Ricinus communis]
8 Hb_122911_010 0.0151200959 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
9 Hb_187024_020 0.0197661689 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
10 Hb_002342_040 0.0223224776 - - FERONIA, partial [Arabis alpina]
11 Hb_000002_160 0.0284329854 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
12 Hb_188168_010 0.0308014068 - - Arylacetamide deacetylase, putative [Ricinus communis]
13 Hb_005426_010 0.0327051007 - - polyprotein [Oryza australiensis]
14 Hb_080293_010 0.0327728148 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
15 Hb_007592_010 0.0328592106 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
16 Hb_039814_010 0.0329620465 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
17 Hb_008092_010 0.0350046296 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
18 Hb_003702_020 0.0354482403 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
19 Hb_000370_050 0.0354837521 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_001659_030 0.0375129491 - - -

Gene co-expression network

sample Hb_072149_010 Hb_072149_010 Hb_002400_110 Hb_002400_110 Hb_072149_010--Hb_002400_110 Hb_004944_030 Hb_004944_030 Hb_072149_010--Hb_004944_030 Hb_001136_140 Hb_001136_140 Hb_072149_010--Hb_001136_140 Hb_001100_020 Hb_001100_020 Hb_072149_010--Hb_001100_020 Hb_010452_030 Hb_010452_030 Hb_072149_010--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_072149_010--Hb_000045_270 Hb_002400_110--Hb_004944_030 Hb_002400_110--Hb_001136_140 Hb_002400_110--Hb_001100_020 Hb_002400_110--Hb_010452_030 Hb_002400_110--Hb_000045_270 Hb_004944_030--Hb_001136_140 Hb_004944_030--Hb_001100_020 Hb_004944_030--Hb_010452_030 Hb_004944_030--Hb_000045_270 Hb_001136_140--Hb_001100_020 Hb_001136_140--Hb_010452_030 Hb_001136_140--Hb_000045_270 Hb_001100_020--Hb_010452_030 Hb_001100_020--Hb_000045_270 Hb_010452_030--Hb_000045_270 Hb_122911_010 Hb_122911_010 Hb_010452_030--Hb_122911_010 Hb_000045_270--Hb_122911_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0667121 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0242396 0

CAGE analysis