Hb_123238_010

Information

Type -
Description -
Location Contig123238: 1922-2827
Sequence    

Annotation

kegg
ID rcu:RCOM_1352560
description RING-H2 finger protein ATL3C, putative
nr
ID KDP29209.1
description hypothetical protein JCGZ_16598 [Jatropha curcas]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID A0A067KBQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16598 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123238_010 0.0 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
2 Hb_003344_020 0.002023051 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
3 Hb_001659_030 0.0034767103 - - -
4 Hb_080293_010 0.0082202388 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
5 Hb_000002_160 0.0125621696 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
6 Hb_187024_020 0.0212303812 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
7 Hb_007259_030 0.0308803026 - - -
8 Hb_185340_020 0.0311631234 - - -
9 Hb_001136_140 0.0384375211 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
10 Hb_008248_010 0.0389786825 - - -
11 Hb_004944_030 0.0392896609 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
12 Hb_072149_010 0.0409864299 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
13 Hb_002400_110 0.041228327 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001100_020 0.0464040025 - - -
15 Hb_006011_060 0.0468110619 - - -
16 Hb_003392_020 0.047493684 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
17 Hb_010452_030 0.0477203577 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
18 Hb_000045_270 0.0504090798 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003430_010 0.0540517191 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
20 Hb_000123_320 0.0555503376 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]

Gene co-expression network

sample Hb_123238_010 Hb_123238_010 Hb_003344_020 Hb_003344_020 Hb_123238_010--Hb_003344_020 Hb_001659_030 Hb_001659_030 Hb_123238_010--Hb_001659_030 Hb_080293_010 Hb_080293_010 Hb_123238_010--Hb_080293_010 Hb_000002_160 Hb_000002_160 Hb_123238_010--Hb_000002_160 Hb_187024_020 Hb_187024_020 Hb_123238_010--Hb_187024_020 Hb_007259_030 Hb_007259_030 Hb_123238_010--Hb_007259_030 Hb_003344_020--Hb_001659_030 Hb_003344_020--Hb_080293_010 Hb_003344_020--Hb_000002_160 Hb_003344_020--Hb_187024_020 Hb_003344_020--Hb_007259_030 Hb_001659_030--Hb_080293_010 Hb_001659_030--Hb_000002_160 Hb_001659_030--Hb_187024_020 Hb_001659_030--Hb_007259_030 Hb_080293_010--Hb_000002_160 Hb_080293_010--Hb_187024_020 Hb_001136_140 Hb_001136_140 Hb_080293_010--Hb_001136_140 Hb_000002_160--Hb_187024_020 Hb_000002_160--Hb_001136_140 Hb_187024_020--Hb_001136_140 Hb_004944_030 Hb_004944_030 Hb_187024_020--Hb_004944_030 Hb_185340_020 Hb_185340_020 Hb_007259_030--Hb_185340_020 Hb_008248_010 Hb_008248_010 Hb_007259_030--Hb_008248_010 Hb_006011_060 Hb_006011_060 Hb_007259_030--Hb_006011_060 Hb_003392_020 Hb_003392_020 Hb_007259_030--Hb_003392_020 Hb_003430_010 Hb_003430_010 Hb_007259_030--Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_007259_030--Hb_000123_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0626922 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0181986 0

CAGE analysis