Hb_187024_020

Information

Type -
Description -
Location Contig187024: 15047-16046
Sequence    

Annotation

kegg
ID sot:102598429
description uncharacterized LOC102598429
nr
ID XP_006340021.1
description PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID A5B8Q2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187024_020 0.0 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
2 Hb_000002_160 0.0086696314 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
3 Hb_080293_010 0.0130115461 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
4 Hb_001136_140 0.0172154372 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
5 Hb_001659_030 0.0177544869 - - -
6 Hb_004944_030 0.0180681698 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_003344_020 0.0192078451 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
8 Hb_072149_010 0.0197661689 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
9 Hb_002400_110 0.0200082467 - - conserved hypothetical protein [Ricinus communis]
10 Hb_123238_010 0.0212303812 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
11 Hb_001100_020 0.0251881061 - - -
12 Hb_010452_030 0.0265056209 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
13 Hb_000045_270 0.0291968309 - - conserved hypothetical protein [Ricinus communis]
14 Hb_122911_010 0.0348806012 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
15 Hb_188168_010 0.0407128328 - - Arylacetamide deacetylase, putative [Ricinus communis]
16 Hb_002342_040 0.0420786584 - - FERONIA, partial [Arabis alpina]
17 Hb_039814_010 0.0462379248 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
18 Hb_007259_030 0.0520882421 - - -
19 Hb_185340_020 0.0523707242 - - -
20 Hb_005426_010 0.0524532817 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_187024_020 Hb_187024_020 Hb_000002_160 Hb_000002_160 Hb_187024_020--Hb_000002_160 Hb_080293_010 Hb_080293_010 Hb_187024_020--Hb_080293_010 Hb_001136_140 Hb_001136_140 Hb_187024_020--Hb_001136_140 Hb_001659_030 Hb_001659_030 Hb_187024_020--Hb_001659_030 Hb_004944_030 Hb_004944_030 Hb_187024_020--Hb_004944_030 Hb_003344_020 Hb_003344_020 Hb_187024_020--Hb_003344_020 Hb_000002_160--Hb_080293_010 Hb_000002_160--Hb_001659_030 Hb_000002_160--Hb_003344_020 Hb_123238_010 Hb_123238_010 Hb_000002_160--Hb_123238_010 Hb_000002_160--Hb_001136_140 Hb_080293_010--Hb_001659_030 Hb_080293_010--Hb_003344_020 Hb_080293_010--Hb_123238_010 Hb_080293_010--Hb_001136_140 Hb_001136_140--Hb_004944_030 Hb_072149_010 Hb_072149_010 Hb_001136_140--Hb_072149_010 Hb_002400_110 Hb_002400_110 Hb_001136_140--Hb_002400_110 Hb_001100_020 Hb_001100_020 Hb_001136_140--Hb_001100_020 Hb_010452_030 Hb_010452_030 Hb_001136_140--Hb_010452_030 Hb_000045_270 Hb_000045_270 Hb_001136_140--Hb_000045_270 Hb_001659_030--Hb_003344_020 Hb_001659_030--Hb_123238_010 Hb_007259_030 Hb_007259_030 Hb_001659_030--Hb_007259_030 Hb_004944_030--Hb_072149_010 Hb_004944_030--Hb_002400_110 Hb_004944_030--Hb_001100_020 Hb_004944_030--Hb_010452_030 Hb_004944_030--Hb_000045_270 Hb_003344_020--Hb_123238_010 Hb_003344_020--Hb_007259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.167893 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0548329 0

CAGE analysis