Hb_000260_320

Information

Type -
Description -
Location Contig260: 217358-219644
Sequence    

Annotation

kegg
ID rcu:RCOM_0126940
description hypothetical protein
nr
ID XP_012090976.1
description PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00612 PE=4 SV=1
Gene Ontology
ID GO:0005886
description late embryogenesis abundant hydroxyproline-rich glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_320 0.0 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
2 Hb_000877_090 0.0857824055 - - allergenic-related protein Pt2L4 [Manihot esculenta]
3 Hb_012055_100 0.0985972311 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
4 Hb_003376_340 0.1173348353 - - conserved hypothetical protein [Ricinus communis]
5 Hb_046117_050 0.1177704937 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
6 Hb_003253_060 0.1200156346 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
7 Hb_047690_010 0.1225171409 - - Phosphoprotein phosphatase [Theobroma cacao]
8 Hb_011909_030 0.1244355144 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
9 Hb_001487_020 0.1253758024 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
10 Hb_150643_010 0.1293743618 - - lipid binding protein, putative [Ricinus communis]
11 Hb_135811_020 0.1316086992 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
12 Hb_000532_060 0.136674265 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_004656_020 0.1385295388 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
14 Hb_000116_390 0.1388183707 - - Mlo protein [Hevea brasiliensis]
15 Hb_001114_210 0.1421810899 - - PREDICTED: periaxin [Jatropha curcas]
16 Hb_002019_030 0.1423036519 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_000031_130 0.1464757934 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
18 Hb_001953_130 0.1476569173 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
19 Hb_000535_030 0.1498599912 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_009083_080 0.1545900929 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000260_320 Hb_000260_320 Hb_000877_090 Hb_000877_090 Hb_000260_320--Hb_000877_090 Hb_012055_100 Hb_012055_100 Hb_000260_320--Hb_012055_100 Hb_003376_340 Hb_003376_340 Hb_000260_320--Hb_003376_340 Hb_046117_050 Hb_046117_050 Hb_000260_320--Hb_046117_050 Hb_003253_060 Hb_003253_060 Hb_000260_320--Hb_003253_060 Hb_047690_010 Hb_047690_010 Hb_000260_320--Hb_047690_010 Hb_000877_090--Hb_012055_100 Hb_002019_030 Hb_002019_030 Hb_000877_090--Hb_002019_030 Hb_000877_090--Hb_003376_340 Hb_000532_060 Hb_000532_060 Hb_000877_090--Hb_000532_060 Hb_000877_090--Hb_046117_050 Hb_012055_100--Hb_046117_050 Hb_012055_100--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_012055_100--Hb_001487_020 Hb_150643_010 Hb_150643_010 Hb_012055_100--Hb_150643_010 Hb_003376_340--Hb_046117_050 Hb_003376_340--Hb_000532_060 Hb_000345_190 Hb_000345_190 Hb_003376_340--Hb_000345_190 Hb_011909_030 Hb_011909_030 Hb_003376_340--Hb_011909_030 Hb_003376_340--Hb_047690_010 Hb_003376_340--Hb_150643_010 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_046117_050--Hb_000532_060 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_000345_190 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080 Hb_004656_020 Hb_004656_020 Hb_003253_060--Hb_004656_020 Hb_003253_060--Hb_047690_010 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_003253_060--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_003253_060--Hb_135811_020 Hb_003253_060--Hb_150643_010 Hb_047690_010--Hb_150643_010 Hb_047690_010--Hb_001487_020 Hb_047690_010--Hb_135811_020 Hb_047690_010--Hb_004656_020 Hb_047690_010--Hb_046117_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0690055 8.23015 0.0364648 0.739126 0 0.040542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105423 0.124368 0 4.82179 0

CAGE analysis