Hb_012055_100

Information

Type -
Description -
Location Contig12055: 82690-84795
Sequence    

Annotation

kegg
ID rcu:RCOM_1155220
description heat shock protein 70 (HSP70)-interacting protein, putative
nr
ID XP_002524964.1
description heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
swissprot
ID Q99614
description Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1
trembl
ID B9SG45
description Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis GN=RCOM_1155220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_100 0.0 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
2 Hb_000260_320 0.0985972311 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
3 Hb_000877_090 0.1089840052 - - allergenic-related protein Pt2L4 [Manihot esculenta]
4 Hb_046117_050 0.1099090879 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
5 Hb_000532_060 0.114103595 - - copper-transporting atpase p-type, putative [Ricinus communis]
6 Hb_001487_020 0.1210614643 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
7 Hb_150643_010 0.1256242795 - - lipid binding protein, putative [Ricinus communis]
8 Hb_000170_230 0.126742797 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
9 Hb_047690_010 0.1277590699 - - Phosphoprotein phosphatase [Theobroma cacao]
10 Hb_135811_020 0.1378149767 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
11 Hb_005081_080 0.1392555729 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
12 Hb_000345_190 0.1435396829 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
13 Hb_003376_340 0.1437314123 - - conserved hypothetical protein [Ricinus communis]
14 Hb_128912_010 0.1510987499 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
15 Hb_011909_030 0.1515763204 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
16 Hb_003253_060 0.1537413721 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
17 Hb_045810_010 0.1600986719 - - PREDICTED: laccase-12-like [Jatropha curcas]
18 Hb_000417_290 0.1614765873 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001863_100 0.1616420879 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000333_130 0.1678231408 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012055_100 Hb_012055_100 Hb_000260_320 Hb_000260_320 Hb_012055_100--Hb_000260_320 Hb_000877_090 Hb_000877_090 Hb_012055_100--Hb_000877_090 Hb_046117_050 Hb_046117_050 Hb_012055_100--Hb_046117_050 Hb_000532_060 Hb_000532_060 Hb_012055_100--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_012055_100--Hb_001487_020 Hb_150643_010 Hb_150643_010 Hb_012055_100--Hb_150643_010 Hb_000260_320--Hb_000877_090 Hb_003376_340 Hb_003376_340 Hb_000260_320--Hb_003376_340 Hb_000260_320--Hb_046117_050 Hb_003253_060 Hb_003253_060 Hb_000260_320--Hb_003253_060 Hb_047690_010 Hb_047690_010 Hb_000260_320--Hb_047690_010 Hb_002019_030 Hb_002019_030 Hb_000877_090--Hb_002019_030 Hb_000877_090--Hb_003376_340 Hb_000877_090--Hb_000532_060 Hb_000877_090--Hb_046117_050 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_046117_050--Hb_000532_060 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_003376_340 Hb_000345_190 Hb_000345_190 Hb_046117_050--Hb_000345_190 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080 Hb_000532_060--Hb_000345_190 Hb_000532_060--Hb_000170_230 Hb_000532_060--Hb_003376_340 Hb_000532_060--Hb_150643_010 Hb_000532_060--Hb_001487_020 Hb_001487_020--Hb_047690_010 Hb_001487_020--Hb_150643_010 Hb_135811_020 Hb_135811_020 Hb_001487_020--Hb_135811_020 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_005081_080 Hb_150643_010--Hb_047690_010 Hb_150643_010--Hb_135811_020 Hb_150643_010--Hb_003253_060 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0625827 5.09291 0.00774301 0.556503 0.0195301 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0474252 0.0559723 0.0353369 2.20552 0

CAGE analysis