Hb_000877_090

Information

Type -
Description -
Location Contig877: 113375-114229
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAM55492.1
description allergenic-related protein Pt2L4 [Manihot esculenta]
swissprot
ID -
description -
trembl
ID Q8L5H5
description Allergenic-related protein Pt2L4 OS=Manihot esculenta GN=c1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61276: 113023-114253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000877_090 0.0 - - allergenic-related protein Pt2L4 [Manihot esculenta]
2 Hb_000260_320 0.0857824055 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
3 Hb_012055_100 0.1089840052 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
4 Hb_002019_030 0.1279035592 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_003376_340 0.1477785456 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000532_060 0.148728726 - - copper-transporting atpase p-type, putative [Ricinus communis]
7 Hb_046117_050 0.1489159247 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
8 Hb_135811_020 0.1501965011 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
9 Hb_001114_210 0.1502611091 - - PREDICTED: periaxin [Jatropha curcas]
10 Hb_047690_010 0.1515167386 - - Phosphoprotein phosphatase [Theobroma cacao]
11 Hb_011909_030 0.1535919287 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
12 Hb_150643_010 0.154912197 - - lipid binding protein, putative [Ricinus communis]
13 Hb_000535_030 0.155061164 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
14 Hb_006198_150 0.1593226125 - - -
15 Hb_003253_060 0.1603591274 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
16 Hb_038758_010 0.1605152987 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_128912_010 0.1613120061 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
18 Hb_000116_390 0.1630395905 - - Mlo protein [Hevea brasiliensis]
19 Hb_001487_020 0.1635201999 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
20 Hb_001080_040 0.1639073271 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000877_090 Hb_000877_090 Hb_000260_320 Hb_000260_320 Hb_000877_090--Hb_000260_320 Hb_012055_100 Hb_012055_100 Hb_000877_090--Hb_012055_100 Hb_002019_030 Hb_002019_030 Hb_000877_090--Hb_002019_030 Hb_003376_340 Hb_003376_340 Hb_000877_090--Hb_003376_340 Hb_000532_060 Hb_000532_060 Hb_000877_090--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000877_090--Hb_046117_050 Hb_000260_320--Hb_012055_100 Hb_000260_320--Hb_003376_340 Hb_000260_320--Hb_046117_050 Hb_003253_060 Hb_003253_060 Hb_000260_320--Hb_003253_060 Hb_047690_010 Hb_047690_010 Hb_000260_320--Hb_047690_010 Hb_012055_100--Hb_046117_050 Hb_012055_100--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_012055_100--Hb_001487_020 Hb_150643_010 Hb_150643_010 Hb_012055_100--Hb_150643_010 Hb_006418_010 Hb_006418_010 Hb_002019_030--Hb_006418_010 Hb_004656_020 Hb_004656_020 Hb_002019_030--Hb_004656_020 Hb_002019_030--Hb_003253_060 Hb_001114_210 Hb_001114_210 Hb_002019_030--Hb_001114_210 Hb_009083_080 Hb_009083_080 Hb_002019_030--Hb_009083_080 Hb_003376_340--Hb_046117_050 Hb_003376_340--Hb_000532_060 Hb_000345_190 Hb_000345_190 Hb_003376_340--Hb_000345_190 Hb_011909_030 Hb_011909_030 Hb_003376_340--Hb_011909_030 Hb_003376_340--Hb_047690_010 Hb_003376_340--Hb_150643_010 Hb_000532_060--Hb_000345_190 Hb_000170_230 Hb_000170_230 Hb_000532_060--Hb_000170_230 Hb_000532_060--Hb_046117_050 Hb_000532_060--Hb_150643_010 Hb_000532_060--Hb_001487_020 Hb_046117_050--Hb_000170_230 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_000345_190 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.5482 6146.38 22.9348 329.212 38.4292 24.3399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
201.779 52.5958 6.51249 3201.71 2.16627

CAGE analysis