Hb_000106_070

Information

Type -
Description -
Location Contig106: 104658-108305
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02330g
description nodulin family protein
nr
ID XP_012073100.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067KYU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06085 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein nuclear fusion defective 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_070 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
2 Hb_003052_200 0.115682561 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
3 Hb_000670_110 0.1364925329 - - l-asparaginase, putative [Ricinus communis]
4 Hb_011618_040 0.1604633302 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003299_010 0.1725825451 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_011970_040 0.1736429084 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003119_070 0.1753356929 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_001248_030 0.1871122546 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_133636_010 0.1897266589 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
10 Hb_000685_060 0.1972694976 - - ring finger protein, putative [Ricinus communis]
11 Hb_003504_040 0.1984137982 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
12 Hb_001454_340 0.1993561185 - - ATDI21 [Manihot esculenta]
13 Hb_002760_030 0.2015672214 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
14 Hb_070277_010 0.2039272303 - - PREDICTED: purine permease 3-like [Jatropha curcas]
15 Hb_000762_070 0.206756644 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
16 Hb_005841_080 0.207535435 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
17 Hb_001640_020 0.207658183 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
18 Hb_005157_010 0.2113079635 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_004136_050 0.2115892286 - - -
20 Hb_164010_090 0.2170847727 - - cellulose synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000106_070 Hb_000106_070 Hb_003052_200 Hb_003052_200 Hb_000106_070--Hb_003052_200 Hb_000670_110 Hb_000670_110 Hb_000106_070--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_000106_070--Hb_011618_040 Hb_003299_010 Hb_003299_010 Hb_000106_070--Hb_003299_010 Hb_011970_040 Hb_011970_040 Hb_000106_070--Hb_011970_040 Hb_003119_070 Hb_003119_070 Hb_000106_070--Hb_003119_070 Hb_003052_200--Hb_000670_110 Hb_070277_010 Hb_070277_010 Hb_003052_200--Hb_070277_010 Hb_001248_030 Hb_001248_030 Hb_003052_200--Hb_001248_030 Hb_003052_200--Hb_011970_040 Hb_002304_140 Hb_002304_140 Hb_003052_200--Hb_002304_140 Hb_000670_110--Hb_011970_040 Hb_004195_110 Hb_004195_110 Hb_000670_110--Hb_004195_110 Hb_000670_110--Hb_011618_040 Hb_000670_110--Hb_001248_030 Hb_000556_110 Hb_000556_110 Hb_011618_040--Hb_000556_110 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_011618_040--Hb_003119_070 Hb_007416_150 Hb_007416_150 Hb_011618_040--Hb_007416_150 Hb_005157_010 Hb_005157_010 Hb_003299_010--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_003299_010--Hb_000685_060 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003504_040 Hb_003504_040 Hb_003299_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_002783_320 Hb_002783_320 Hb_011970_040--Hb_002783_320 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_011970_040--Hb_001248_030 Hb_005663_050 Hb_005663_050 Hb_003119_070--Hb_005663_050 Hb_002003_020 Hb_002003_020 Hb_003119_070--Hb_002003_020 Hb_001838_050 Hb_001838_050 Hb_003119_070--Hb_001838_050 Hb_003119_070--Hb_003031_030 Hb_017866_020 Hb_017866_020 Hb_003119_070--Hb_017866_020 Hb_000616_050 Hb_000616_050 Hb_003119_070--Hb_000616_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.676317 5.04575 0.0701962 1.07389 0.0334279 0.337592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192663 0.181921 0.144254 5.65029 0.0321636

CAGE analysis